SMTL ID : 5g15.1

Structure Aurora A (122-403) bound to activating monobody Mb1 and AMPPCP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.06 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ACP: PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER(Non-covalent)

ACP.1: 13 residues within 4Å: Chain A: G.19, K.20, G.21, K.22, V.26, A.39, K.41, L.73, E.90, Y.91, A.92, D.153 Ligands: MG.2 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:K.22, A:K.22, A:K.41, A:E.90, A:A.92, A:D.153 Water bridges: A:G.21, A:F.23, A:T.96 Salt bridges: A:K.41

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: K.41, E.60, D.153 Ligands: ACP.1 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.153, H2O.1, H2O.1

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain A: P.228, D.229, F.230 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.229, A:F.230 SO4.4: 4 residues within 4Å: Chain A: R.59, R.134, V.158, S.163 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.163 Salt bridges: A:R.59, A:R.134 SO4.5: 4 residues within 4Å: Chain A: H.127, E.187, M.252, L.253 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.253 Water bridges: A:S.124, A:R.254 Salt bridges: A:H.127 SO4.6: 5 residues within 4Å: Chain B: Y.42, F.54, T.64, I.65, S.66 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Y.42, B:T.64, B:S.66

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zorba, A. et al., Allosteric modulation of a human protein kinase with monobodies. Proc.Natl.Acad.Sci.USA (2019)

Release Date

2018-03-14

Peptides

AURORA A KINASE: A
MB1 MONOBODY: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

AURORA A KINASE

MB1 MONOBODY

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