SMTL ID : 8ssp.1

AurA bound to danusertib and activating monobody Mb1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-1-1-mer

Ligands

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 2 residues within 4Å: Chain A: D.231, F.232 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.231 EDO.4: 9 residues within 4Å: Chain A: R.167, T.168, T.169, L.170, E.180, M.181, G.184, R.185, H.187 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.170, A:R.185 EDO.5: 4 residues within 4Å: Chain A: R.185, H.247, N.248, P.249 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.247 EDO.8: 4 residues within 4Å: Chain A: H.71, N.123, S.126, Y.127 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.71, A:S.126, A:Y.127 EDO.9: 6 residues within 4Å: Chain A: P.140, E.141, D.175, Y.176, E.202, P.208 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.176, A:Y.176 Water bridges: A:E.211

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: R.101, K.105 Ligands: 627.10 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.101, A:K.105 SO4.11: 4 residues within 4Å: Chain A: R.61, R.136, V.160, S.165 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.165, A:T.169 Water bridges: A:R.61, A:R.166, A:R.166 Salt bridges: A:R.61, A:R.136

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.3: 9 residues within 4Å: Chain A: K.24, F.25, K.43, L.45, V.55, Q.58, L.59, E.62 Ligands: 627.10 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.24, A:Q.58 Salt bridges: A:K.43, A:E.62, A:D.155

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.6: 3 residues within 4Å: Chain A: H.68, R.70, K.131 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:H.68, A:R.70, A:K.131

1 x PDO: 1,3-PROPANDIOL(Non-covalent)

PDO.7: 5 residues within 4Å: Chain A: H.129, E.189, M.254, L.255, R.256 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:M.254, A:L.255 Hydrogen bonds: A:E.189, A:L.255, A:R.256

1 x 627: N-[(3E)-5-[(2R)-2-METHOXY-2-PHENYLACETYL]PYRROLO[3,4-C]PYRAZOL-3(5H)-YLIDENE]-4-(4-METHYLPIPERAZIN-1-YL)BENZAMIDE(Non-covalent)

627.10: 18 residues within 4Å: Chain A: L.20, K.22, V.28, A.41, K.43, L.75, L.91, E.92, Y.93, A.94, P.95, G.97, T.98, E.141, L.144, A.154 Ligands: SO4.2, MES.3 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:T.98, A:L.144, A:A.154 Hydrogen bonds: A:E.92, A:A.94, A:A.94 Water bridges: A:D.155

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, C. et al., A biophysical framework for double-drugging kinases. Proc.Natl.Acad.Sci.USA (2023)

Release Date

2023-09-06

Peptides

Aurora kinase A: A
Mb1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Aurora kinase A

Mb1

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