- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.75 Å
- Oligo State
- homo-dimer
- Ligands
- 6 x CU: COPPER (II) ION(Non-covalent)
- 14 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
MPD.4: 13 residues within 4Å:- Chain A: L.221, A.224, D.225, L.238, L.239, L.240, E.244, R.245, A.246, F.389, Y.391, K.395
- Ligands: MRD.8
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:A.224, A:L.240, A:A.246, A:F.389, A:K.395
- Hydrogen bonds: A:R.245, A:Y.391
MPD.5: 1 residues within 4Å:- Chain A: K.415
No protein-ligand interaction detected (PLIP)MPD.7: 3 residues within 4Å:- Chain A: P.218, E.234, S.236
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:P.218, A:E.234
- Hydrogen bonds: A:E.234
MPD.9: 4 residues within 4Å:- Chain A: P.2, S.3, V.191, Q.193
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:P.2
- Water bridges: A:V.191, A:Q.193
MPD.10: 4 residues within 4Å:- Chain A: P.168, W.171, R.430
- Ligands: MPD.11
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:P.168
MPD.11: 5 residues within 4Å:- Chain A: G.117, W.171, D.429, R.430
- Ligands: MPD.10
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:W.171, A:W.171, A:D.429
- Hydrogen bonds: A:R.430
- Water bridges: A:R.335
MPD.15: 5 residues within 4Å:- Chain A: P.168, M.169, M.272, M.331, M.332
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:P.168
- Hydrogen bonds: A:P.168
MPD.19: 13 residues within 4Å:- Chain B: L.221, A.224, D.225, L.238, L.239, L.240, E.244, R.245, A.246, F.389, Y.391, K.395
- Ligands: MRD.23
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:A.224, B:L.240, B:A.246, B:F.389, B:K.395
- Hydrogen bonds: B:R.245
MPD.20: 1 residues within 4Å:- Chain B: K.415
No protein-ligand interaction detected (PLIP)MPD.22: 3 residues within 4Å:- Chain B: P.218, E.234, S.236
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:P.218, B:E.234
- Hydrogen bonds: B:E.234, B:E.234
MPD.24: 4 residues within 4Å:- Chain B: P.2, S.3, V.191, Q.193
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:P.2
- Water bridges: B:V.191, B:Q.193
MPD.25: 4 residues within 4Å:- Chain B: P.168, W.171, R.430
- Ligands: MPD.26
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:P.168
MPD.26: 5 residues within 4Å:- Chain B: G.117, W.171, D.429, R.430
- Ligands: MPD.25
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:W.171, B:W.171, B:D.429
- Hydrogen bonds: B:R.430
- Water bridges: B:R.335
MPD.30: 5 residues within 4Å:- Chain B: P.168, M.169, M.272, M.331, M.332
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:P.168
- Hydrogen bonds: B:P.168
- 8 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)
MRD.6: 6 residues within 4Å:- Chain A: E.104, L.105, A.106, S.135, F.228, S.311
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:A.106
- Hydrogen bonds: A:S.311
MRD.8: 6 residues within 4Å:- Chain A: L.233, V.235, E.237, L.238, P.390
- Ligands: MPD.4
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:L.233, A:V.235, A:L.238, A:P.390
MRD.12: 5 residues within 4Å:- Chain A: K.8, L.19, L.21, G.41, P.47
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:K.8, A:L.21, A:P.47
MRD.13: 5 residues within 4Å:- Chain A: P.314, L.316, W.394, P.411, R.413
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:L.316, A:P.411
- Water bridges: A:W.394
MRD.21: 6 residues within 4Å:- Chain B: E.104, L.105, A.106, S.135, F.228, S.311
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:A.106
- Hydrogen bonds: B:S.311
- Water bridges: B:E.104
MRD.23: 6 residues within 4Å:- Chain B: L.233, V.235, E.237, L.238, P.390
- Ligands: MPD.19
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:L.233, B:V.235, B:L.238, B:P.390
MRD.27: 5 residues within 4Å:- Chain B: K.8, L.19, L.21, G.41, P.47
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:K.8, B:L.21, B:P.47
MRD.28: 5 residues within 4Å:- Chain B: P.314, L.316, W.394, P.411, R.413
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:L.316, B:P.411
- Water bridges: B:E.104, B:W.394
- 2 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ruiz-Arellano, R. et al., Preserving Metallic Sites Affected by Radiation Damage the Cut2 Case in Thermus Thermophilus Multicopper Oxidase. To be Published
- Release Date
- 2017-06-07
- Peptides
- THERMUS THERMOPHILUS MULTICOPPER OXIDASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.75 Å
- Oligo State
- homo-dimer
- Ligands
- 6 x CU: COPPER (II) ION(Non-covalent)
- 14 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- 8 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)
- 2 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ruiz-Arellano, R. et al., Preserving Metallic Sites Affected by Radiation Damage the Cut2 Case in Thermus Thermophilus Multicopper Oxidase. To be Published
- Release Date
- 2017-06-07
- Peptides
- THERMUS THERMOPHILUS MULTICOPPER OXIDASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A