SMTL ID : 5g3h.1

Preserving Metallic Sites Affected by Radiation Damage the CuT2 Case in Thermus Thermophilus Multicopper oxidase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.93 Å

Oligo State

monomer

Ligands

3 x CU: COPPER (II) ION(Non-covalent)

CU.1: 5 residues within 4Å: Chain A: H.72, H.74, W.110, H.112, H.423 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.74, A:H.112, A:H.423 CU.2: 5 residues within 4Å: Chain A: H.370, C.422, I.424, H.427, M.432 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.370, A:C.422, A:H.427 CU.3: 5 residues within 4Å: Chain A: H.72, H.114, H.373, H.375, H.421 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.114, A:H.375, A:H.421

6 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.4: 12 residues within 4Å: Chain A: L.221, A.224, D.225, L.238, L.239, L.240, E.244, R.245, A.246, Y.391, K.395 Ligands: MPD.11 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:A.224, A:L.240 Hydrogen bonds: A:R.245, A:Y.391 MPD.5: 5 residues within 4Å: Chain A: P.168, M.272, M.331, M.332 Ligands: MPD.10 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:P.168 MPD.6: 4 residues within 4Å: Chain A: E.104, S.136, F.228, S.311 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.311 Water bridges: A:S.136 MPD.10: 6 residues within 4Å: Chain A: P.168, W.171, A.333, R.430 Ligands: MPD.5, MRD.9 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:P.168, A:W.171 Hydrogen bonds: A:A.333 Water bridges: A:R.430 MPD.11: 7 residues within 4Å: Chain A: L.233, V.235, E.237, L.238, P.390, Y.391 Ligands: MPD.4 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.233, A:P.390 MPD.13: 3 residues within 4Å: Chain A: N.339, G.340, Q.341 No protein-ligand interaction detected (PLIP)

4 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)

MRD.7: 4 residues within 4Å: Chain A: E.104, L.316, P.411, R.413 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.316, A:P.411 MRD.8: 2 residues within 4Å: Chain A: K.415, G.416 1 PLIP interactions: 1 interactions with chain A Water bridges: A:G.416 MRD.9: 5 residues within 4Å: Chain A: G.117, W.171, D.429, R.430 Ligands: MPD.10 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:W.171, A:W.171, A:D.429 Hydrogen bonds: A:R.430 MRD.12: 3 residues within 4Å: Chain A: D.216, H.217, P.218 No protein-ligand interaction detected (PLIP)

1 x NA: SODIUM ION(Non-functional Binders)

NA.14: 2 residues within 4Å: Chain A: T.24, G.42 3 PLIP interactions: 3 interactions with chain A Water bridges: A:S.22, A:S.22, A:G.42

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ruiz-Arellano, R. et al., Preserving Metallic Sites Affected by Radiation Damage the Cut2 Case in Thermus Thermophilus Multicopper Oxidase. To be Published

Release Date

2017-06-21

Peptides

THERMUS THERMOPHILUS MULTICOPPER OXIDASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

THERMUS THERMOPHILUS MULTICOPPER OXIDASE

Related Entries With Identical Sequence