SMTL ID : 5g49.1

Crystal structure of the Arabodopsis thaliana histone-fold dimer L1L NF-YC3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-1-1-mer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 1 residues within 4Å: Chain B: D.84 5 PLIP interactions: 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:D.84, H2O.4, H2O.4, H2O.5, H2O.5

3 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 5 residues within 4Å: Chain A: Y.91, Y.95 Chain B: K.14, N.15, H.16 5 PLIP interactions: 1 interactions with chain A, 4 interactions with chain B Hydrophobic interactions: A:Y.95, B:N.15 Hydrogen bonds: B:N.15, B:N.15 Salt bridges: B:H.16 ACT.3: 3 residues within 4Å: Chain A: P.87 Chain B: K.5, E.6 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Water bridges: A:P.87 Hydrogen bonds: B:E.6 ACT.4: 5 residues within 4Å: Chain A: S.33, D.35, S.36 Chain B: Q.72, K.73 5 PLIP interactions: 2 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:S.33, A:D.35, B:K.73 Hydrophobic interactions: B:Q.72 Water bridges: B:N.74

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gnesutta, N. et al., Crystal Structure of the Arabidopsis thaliana L1L/NF-YC3 Histone-fold Dimer Reveals Specificities of the LEC1 Family of NF-Y Subunits in Plants. Mol Plant (2017)

Release Date

2016-12-07

Peptides

NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6: A
NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6

NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3

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