SMTL ID : 5g4r.2 (3 other biounits)

BROMODOMAIN OF HUMAN BRPF1 WITH N-1,3-dimethyl-6-2R-2- methylpiperazin-1-yl-2-oxo-2,3-dihydro-1H-1,3-benzodiazol-5-yl-2- methoxybenzamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.96 Å

Oligo State

monomer

Ligands

1 x LF1: N-[1,3-dimethyl-6-[(2R)-2-methylpiperazin-1-yl]-2-oxidanylidene-benzimidazol-5-yl]-2-methoxy-benzamide(Non-covalent)

LF1.1: 13 residues within 4Å: Chain A: N.31, I.32, F.33, E.35, P.36, V.37, P.38, E.41, V.42, C.84, Y.87, N.88, F.94 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:P.38, A:E.41, A:E.41 Hydrogen bonds: A:N.88 Water bridges: A:E.35, A:E.35 pi-Stacking: A:F.94, A:F.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bamborough, P. et al., Gsk6853, a Chemical Probe for Inhibition of the Brpf1 Bromodomain. Acs Med.Chem.Lett. (2016)

Release Date

2016-07-06

Peptides

PEREGRIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

PEREGRIN

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