SMTL ID : 5ghn.1 (1 other biounit)

Crystal structure of human MTH1(G2K/D120N mutant) in complex with 2-oxo-dATP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.39 Å

Oligo State

monomer

Ligands

1 x 6U4: [[(2R,3S,5R)-5-(6-azanyl-2-oxidanylidene-1H-purin-9-yl)-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate(Non-covalent)

6U4.1: 16 residues within 4Å: Chain A: Y.7, T.8, L.9, N.33, G.36, G.37, K.38, E.52, F.72, M.81, W.117, D.119, N.120, W.123 Ligands: NA.2, NA.3 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:N.33, A:G.36, A:K.38, A:D.119, A:D.119, A:N.120 Water bridges: A:K.38, A:R.51, A:E.52, A:E.52 Salt bridges: A:K.38, A:K.38 pi-Stacking: A:W.117, A:W.117

2 x NA: SODIUM ION(Non-functional Binders)

NA.2: 4 residues within 4Å: Chain A: G.36, G.37, E.56 Ligands: 6U4.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.36 NA.3: 2 residues within 4Å: Chain A: E.52 Ligands: 6U4.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.51, A:E.52 Water bridges: A:Q.40

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Waz, S. et al., Structural and Kinetic Studies of the Human Nudix Hydrolase MTH1 Reveal the Mechanism for Its Broad Substrate Specificity. J. Biol. Chem. (2017)

Release Date

2017-01-04

Peptides

7,8-dihydro-8-oxoguanine triphosphatase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

7,8-dihydro-8-oxoguanine triphosphatase

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