SMTL ID : 5gic.1

Crystal structure of VDR in complex with DLAM-2P

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

hetero-1-1-mer

Ligands

1 x DLC: (3~{R},5~{S})-5-[(2~{R})-2-[(1~{R},3~{a}~{S},4~{Z},7~{a}~{R})-7~{a}-methyl-4-[(2~{E})-2-[(3~{S},5~{R})-2-methylidene-3,5-bis(oxidanyl)cyclohexylidene]ethylidene]-2,3,3~{a},5,6,7-hexahydro-1~{H}-inden-1-yl]propyl]-3-methyl-3-oxidanyl-1-(2-phenylethyl)pyrrolidin-2-one(Non-covalent)

DLC.1: 19 residues within 4Å: Chain A: Y.20, L.53, L.59, V.60, S.63, I.97, R.100, S.101, S.104, W.112, C.114, Y.121, V.126, T.132, L.135, H.223, Y.227, L.230, F.248 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:L.53, A:L.59, A:V.60, A:W.112, A:Y.121, A:V.126, A:T.132, A:Y.227, A:L.230 Hydrogen bonds: A:Y.20, A:Y.20, A:R.100, A:R.100, A:S.104, A:H.223

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Asano, L. et al., Regulation of the vitamin D receptor by vitamin D lactam derivatives. Febs Lett. (2016)

Release Date

2016-12-07

Peptides

Vitamin D3 receptor: A
SRC1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Vitamin D3 receptor

SRC1

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