SMTL ID : 5gnw.1 (3 other biounits)

Crystal structure of Uracil DNA glycosylase-Uracil complex from Bradyrhizobium diazoefficiens.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.87 Å

Oligo State

homo-dimer

Ligands

2 x URA: URACIL(Non-covalent)

URA.1: 12 residues within 4Å: Chain A: G.55, Q.56, D.57, P.58, A.59, E.62, I.68, L.69, V.70, A.73, N.94, H.168 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.56, A:D.57, A:L.69, A:N.94, A:N.94, A:H.168 URA.2: 11 residues within 4Å: Chain B: G.55, Q.56, D.57, P.58, A.59, E.62, I.68, L.69, A.73, N.94, H.168 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:L.69 Hydrogen bonds: B:Q.56, B:D.57, B:L.69, B:N.94, B:N.94, B:H.168

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chembazhi, U.V. et al., Uracil DNA glycosylase (UDG) activities in Bradyrhizobium diazoefficiens: characterization of a new class of UDG with broad substrate specificity. Nucleic Acids Res. (2017)

Release Date

2017-06-14

Peptides

Blr0248 protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Blr0248 protein

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