SMTL ID : 5grk.1 (1 other biounit)

Crystal structure of Uracil DNA glycosylase -Xanthine complex from Bradyrhizobium diazoefficiens

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-dimer

Ligands

2 x XAN: XANTHINE(Non-covalent)

XAN.1: 12 residues within 4Å: Chain A: G.55, Q.56, D.57, P.58, A.59, E.62, I.68, L.69, A.73, N.94, H.168, T.170 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:Q.56, A:D.57, A:A.59, A:E.62, A:L.69, A:N.94, A:N.94, A:H.168 XAN.2: 12 residues within 4Å: Chain B: G.55, Q.56, D.57, P.58, A.59, E.62, I.68, L.69, A.73, N.94, H.168, T.170 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:Q.56, B:D.57, B:A.59, B:E.62, B:L.69, B:N.94, B:N.94, B:H.168

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chembazhi, U.V. et al., Uracil DNA glycosylase (UDG) activities in Bradyrhizobium diazoefficiens: characterization of a new class of UDG with broad substrate specificity. Nucleic Acids Res. (2017)

Release Date

2017-05-03

Peptides

Blr0248 protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Blr0248 protein

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