SMTL ID : 5gr9.1

Crystal structure of PXY-TDIF/CLE41

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.77 Å

Oligo State

hetero-1-1-mer

Ligands

8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 7 residues within 4Å: Chain A: S.59, H.60, Y.79, N.81, S.83, T.103, D.105 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:T.103, A:D.105 Hydrogen bonds: A:S.59, A:N.81, A:S.83, A:D.105 NAG.2: 3 residues within 4Å: Chain A: Q.237, E.238, N.241 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.237, A:N.241 NAG.3: 3 residues within 4Å: Chain A: N.326, T.328, S.350 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.350 NAG.4: 3 residues within 4Å: Chain A: N.324, N.325, N.348 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.348 NAG.5: 3 residues within 4Å: Chain A: Y.366, W.390, N.412 No protein-ligand interaction detected (PLIP) NAG.6: 7 residues within 4Å: Chain A: S.419, Y.439, N.441, S.443, I.463, S.465, E.488 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:I.463 Hydrogen bonds: A:S.419, A:N.441, A:S.443, A:E.488 Water bridges: A:Y.439 NAG.7: 3 residues within 4Å: Chain A: E.474, N.495, G.496 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.474 NAG.8: 6 residues within 4Å: Chain A: F.468, Q.490, N.512, S.514, D.534, D.536 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.490, A:N.512, A:S.514, A:D.536

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, H.Q. et al., Crystal structure of PXY-TDIF complex reveals a conserved recognition mechanism among CLE peptide-receptor pairs. Cell Res. (2016)

Release Date

2016-11-23

Peptides

Leucine-rich repeat receptor-like protein kinase TDR: A
TDIF/CLE41: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

Leucine-rich repeat receptor-like protein kinase TDR

TDIF/CLE41

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