SMTL ID : 5gxh.1

The structure of the Gemin5 WD40 domain with AAUUUUUG

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x A- U- U- U- U- U- G: RNA (5'-R(*A*AP*UP*UP*UP*UP*UP*G)-3')(Non-covalent)

A-U-U-U-U-U-G.1: 24 residues within 4Å: Chain A: N.31, W.32, Y.33, R.51, R.84, R.377, G.398, F.399, Y.401, G.418, K.446, D.465, Y.492, T.493, T.558, E.559, L.598, N.600, K.659, Y.678, R.702, L.704, F.723 Ligands: UNX.6 Protein-ligand interaction information (PLIP) not available

3 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.2: 2 residues within 4Å: Chain A: Q.316, Q.328 No protein-ligand interaction detected (PLIP) UNX.3: 4 residues within 4Å: Chain A: S.561, W.562, S.603, W.604 No protein-ligand interaction detected (PLIP) UNX.6: 3 residues within 4Å: Chain A: R.51, R.84 Ligands: A-U-U-U-U-U-G.1 No protein-ligand interaction detected (PLIP)

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 6 residues within 4Å: Chain A: H.308, P.310, S.311, N.312, P.360, Q.368 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.311, A:N.312, A:N.312, A:Q.368 Water bridges: A:L.361, A:Q.362, A:Q.362 GOL.5: 5 residues within 4Å: Chain A: Y.33, S.131, I.172, F.173, W.304 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.131 Water bridges: A:R.84, A:R.84, A:R.84

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, C. et al., Structural insights into Gemin5-guided selection of pre-snRNAs for snRNP assembly. Genes Dev. (2016)

Release Date

2016-10-26

Peptides

Gem-associated protein 5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Gem-associated protein 5

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