SMTL ID : 5gxi.1

Structure of the Gemin5 WD40 domain in complex with AAUUUUUGAG

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

22 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.1: 7 residues within 4Å: Chain A: H.605, W.665, S.666, H.669, D.670, G.671, R.672 Ligand excluded by PLIP UNX.2: 4 residues within 4Å: Chain A: S.561, W.562, S.603, W.604 Ligand excluded by PLIP UNX.3: 2 residues within 4Å: Chain A: Y.33 Ligands: UNX.9 Ligand excluded by PLIP UNX.4: 3 residues within 4Å: Chain A: G.107, A.124, H.126 Ligand excluded by PLIP UNX.5: 4 residues within 4Å: Chain A: H.308, P.310, S.311, P.360 Ligand excluded by PLIP UNX.6: 2 residues within 4Å: Chain A: Q.316, Q.328 Ligand excluded by PLIP UNX.7: 5 residues within 4Å: Chain A: L.428, S.709, P.710, L.711, D.712 Ligand excluded by PLIP UNX.8: 3 residues within 4Å: Chain A: R.51, R.84 Chain B: U.4 Ligand excluded by PLIP UNX.9: 2 residues within 4Å: Chain A: S.131 Ligands: UNX.3 Ligand excluded by PLIP UNX.10: 4 residues within 4Å: Chain A: V.424, N.426, D.435, K.437 Ligand excluded by PLIP UNX.11: 5 residues within 4Å: Chain A: T.306, L.307, N.357, L.358 Ligands: UNX.12 Ligand excluded by PLIP UNX.12: 4 residues within 4Å: Chain A: A.35, N.357 Ligands: UNX.11, UNX.13 Ligand excluded by PLIP UNX.13: 5 residues within 4Å: Chain A: R.36, S.38, D.39, C.359 Ligands: UNX.12 Ligand excluded by PLIP UNX.14: 2 residues within 4Å: Chain A: K.284 Ligands: UNX.20 Ligand excluded by PLIP UNX.15: 5 residues within 4Å: Chain A: E.122, H.123 Ligands: UNX.16, UNX.17, UNX.18 Ligand excluded by PLIP UNX.16: 4 residues within 4Å: Chain A: T.121, E.122, Y.155 Ligands: UNX.15 Ligand excluded by PLIP UNX.17: 3 residues within 4Å: Chain A: H.123 Ligands: UNX.15, UNX.18 Ligand excluded by PLIP UNX.18: 3 residues within 4Å: Chain A: N.160 Ligands: UNX.15, UNX.17 Ligand excluded by PLIP UNX.19: 2 residues within 4Å: Chain A: H.92, P.137 Ligand excluded by PLIP UNX.20: 2 residues within 4Å: Chain A: K.284 Ligands: UNX.14 Ligand excluded by PLIP UNX.21: 4 residues within 4Å: Chain A: F.399, Y.678, R.702, D.721 Ligand excluded by PLIP UNX.22: 2 residues within 4Å: Chain A: R.697, H.699 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, C. et al., Structural insights into Gemin5-guided selection of pre-snRNAs for snRNP assembly. Genes Dev. (2016)

Release Date

2016-10-26

Peptides

Gem-associated protein 5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Gem-associated protein 5

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