SMTL ID : 5h1t.2 (3 other biounits)

Complex structure of TRIM24 PHD-bromodomain and inhibitor 1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.6, C.9, H.26, C.29 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.6, A:C.9, A:H.26, A:C.29 ZN.2: 4 residues within 4Å: Chain A: C.18, C.21, C.44, C.47 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.18, A:C.21, A:C.44, A:C.47

1 x 7FF: methyl 6-azanyl-3,4-dihydro-2H-quinoline-1-carboxylate(Non-covalent)

7FF.3: 8 residues within 4Å: Chain A: A.100, F.101, V.105, P.106, Y.112, F.156, N.157, V.163 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:V.105 Hydrogen bonds: A:N.157

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.4: 4 residues within 4Å: Chain A: S.51, P.53, P.79, R.83 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.83, A:R.83

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, J. et al., The polar warhead of a TRIM24 bromodomain inhibitor rearranges a water-mediated interaction network. FEBS J. (2017)

Release Date

2017-02-22

Peptides

Transcription intermediary factor 1-alpha: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Transcription intermediary factor 1-alpha

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