SMTL ID : 5h5x.1 (2 other biounits)

Crystal structure of NADH bound carbonyl reductase from Streptomyces coelicolor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-tetramer

Ligands

4 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)

NAI.1: 26 residues within 4Å: Chain A: G.26, A.28, S.29, G.30, I.31, D.50, F.51, L.75, D.76, V.77, N.103, A.104, G.105, I.106, T.127, V.155, A.156, S.157, Y.170, K.174, P.200, G.201, F.202, I.203, T.205 Ligands: IPA.2 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:P.200 Hydrogen bonds: A:A.28, A:S.29, A:I.31, A:F.51, A:D.76, A:V.77, A:N.103, A:G.105, A:K.174, A:I.203, A:I.203 Water bridges: A:S.29, A:S.29, A:N.103 NAI.4: 25 residues within 4Å: Chain B: G.26, A.28, S.29, G.30, I.31, D.50, F.51, L.75, D.76, V.77, N.103, A.104, G.105, T.127, V.155, A.156, S.157, Y.170, K.174, P.200, G.201, F.202, I.203, T.205 Ligands: IPA.5 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:P.200, B:I.203 Hydrogen bonds: B:S.29, B:S.29, B:I.31, B:F.51, B:N.52, B:D.76, B:V.77, B:N.103, B:K.174, B:I.203 Water bridges: B:N.52 NAI.7: 24 residues within 4Å: Chain C: G.26, A.28, S.29, G.30, I.31, D.50, F.51, L.75, D.76, V.77, N.103, A.104, G.105, T.127, V.155, A.156, S.157, Y.170, K.174, P.200, G.201, I.203, T.205 Ligands: IPA.8 22 PLIP interactions: 22 interactions with chain C Hydrophobic interactions: C:P.200, C:I.203 Hydrogen bonds: C:S.29, C:S.29, C:S.29, C:I.31, C:F.51, C:D.76, C:D.76, C:V.77, C:N.103, C:G.105, C:Y.170, C:K.174, C:I.203, C:T.205, C:T.205 Water bridges: C:S.29, C:D.50, C:D.50, C:N.103, C:N.103 NAI.11: 27 residues within 4Å: Chain D: G.26, A.28, S.29, G.30, I.31, D.50, F.51, N.52, L.75, D.76, V.77, T.78, N.103, A.104, G.105, T.127, V.155, A.156, S.157, Y.170, K.174, P.200, G.201, F.202, I.203, T.205 Ligands: IPA.12 21 PLIP interactions: 21 interactions with chain D Hydrophobic interactions: D:P.200, D:I.203 Hydrogen bonds: D:G.26, D:A.28, D:S.29, D:S.29, D:I.31, D:F.51, D:N.52, D:D.76, D:V.77, D:T.78, D:N.103, D:Y.170, D:K.174, D:I.203, D:T.205, D:T.205 Water bridges: D:G.32, D:N.103, D:S.231

7 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.2: 5 residues within 4Å: Chain A: S.157, Y.170, F.202 Ligands: NAI.1, IPA.3 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Y.170 Hydrogen bonds: A:S.157, A:Y.170, A:Y.170 IPA.3: 6 residues within 4Å: Chain A: G.107, L.159, S.167, Y.170, F.202 Ligands: IPA.2 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.159, A:Y.170, A:F.202 Hydrogen bonds: A:S.167 IPA.5: 5 residues within 4Å: Chain B: S.157, Y.170, F.202 Ligands: NAI.4, IPA.6 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:F.202, B:F.202 Hydrogen bonds: B:S.157, B:Y.170, B:Y.170 IPA.6: 5 residues within 4Å: Chain B: G.107, L.159, S.167, Y.170 Ligands: IPA.5 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:L.159, B:Y.170 Hydrogen bonds: B:S.167 IPA.8: 5 residues within 4Å: Chain C: S.157, Y.170, F.202 Ligands: NAI.7, IPA.10 4 PLIP interactions: 4 interactions with chain C Hydrophobic interactions: C:F.202, C:F.202 Hydrogen bonds: C:S.157, C:Y.170 IPA.10: 5 residues within 4Å: Chain C: G.107, S.167, Y.170, F.202 Ligands: IPA.8 1 PLIP interactions: 1 interactions with chain C Hydrophobic interactions: C:Y.170 IPA.12: 4 residues within 4Å: Chain D: S.157, Y.170, F.202 Ligands: NAI.11 4 PLIP interactions: 4 interactions with chain D Hydrophobic interactions: D:Y.170, D:F.202 Hydrogen bonds: D:S.157, D:Y.170

2 x MG: MAGNESIUM ION(Non-covalent)

MG.9: 2 residues within 4Å: Chain A: V.263 Chain C: V.263 5 PLIP interactions: 1 interactions with chain C, 4 Ligand-Water interactions Metal complexes: C:V.263, H2O.1, H2O.1, H2O.3, H2O.9 MG.13: 2 residues within 4Å: Chain B: V.263 Chain D: V.263 5 PLIP interactions: 1 interactions with chain B, 1 interactions with chain D, 3 Ligand-Water interactions Metal complexes: B:V.263, D:V.263, H2O.5, H2O.5, H2O.7

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, M. et al., Crystal structure of NADH bound carbonyl reductase from Streptomyces coelicolor. To Be Published

Release Date

2017-05-10

Peptides

Putative oxidoreductase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Putative oxidoreductase

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