SMTL ID : 5h5x.2 (2 other biounits)

Crystal structure of NADH bound carbonyl reductase from Streptomyces coelicolor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-tetramer

Ligands

4 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)

NAI.1: 26 residues within 4Å: Chain A: G.26, S.29, G.30, I.31, D.50, F.51, L.75, D.76, V.77, T.78, N.103, A.104, G.105, T.127, V.155, A.156, S.157, Y.170, K.174, P.200, G.201, F.202, I.203, T.205, P.206 Ligands: IPA.3 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:P.200 Hydrogen bonds: A:G.26, A:S.29, A:S.29, A:I.31, A:F.51, A:D.76, A:D.76, A:V.77, A:N.103, A:Y.170, A:K.174, A:I.203, A:I.203, A:T.205 Water bridges: A:N.103 NAI.5: 25 residues within 4Å: Chain B: G.26, A.28, S.29, G.30, I.31, D.50, F.51, L.75, D.76, V.77, N.103, A.104, G.105, T.127, V.155, A.156, S.157, Y.170, K.174, P.200, G.201, F.202, I.203, T.205 Ligands: IPA.6 17 PLIP interactions: 17 interactions with chain B Hydrophobic interactions: B:P.200, B:I.203 Hydrogen bonds: B:G.26, B:A.28, B:S.29, B:S.29, B:I.31, B:F.51, B:N.52, B:D.76, B:D.76, B:V.77, B:N.103, B:K.174, B:I.203 Water bridges: B:N.103, B:N.103 NAI.8: 25 residues within 4Å: Chain C: G.26, A.28, S.29, G.30, I.31, D.50, F.51, L.75, D.76, V.77, N.103, A.104, G.105, T.127, V.155, A.156, S.157, Y.170, K.174, P.200, G.201, F.202, I.203, T.205 Ligands: IPA.9 16 PLIP interactions: 16 interactions with chain C Hydrophobic interactions: C:P.200, C:I.203 Hydrogen bonds: C:S.29, C:S.29, C:S.29, C:S.29, C:I.31, C:F.51, C:D.76, C:V.77, C:N.103, C:K.174, C:I.203, C:T.205, C:T.205 Water bridges: C:D.50 NAI.11: 26 residues within 4Å: Chain D: G.26, A.28, S.29, G.30, I.31, D.50, F.51, L.75, D.76, V.77, T.78, N.103, A.104, G.105, T.127, V.155, A.156, S.157, Y.170, K.174, P.200, G.201, F.202, I.203, T.205 Ligands: IPA.13 18 PLIP interactions: 18 interactions with chain D Hydrophobic interactions: D:P.200, D:I.203 Hydrogen bonds: D:S.29, D:S.29, D:S.29, D:S.29, D:I.31, D:F.51, D:N.52, D:D.76, D:V.77, D:N.103, D:Y.170, D:K.174, D:I.203, D:T.205 Water bridges: D:G.32, D:N.103

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: V.263 Chain C: V.263 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:V.263, H2O.7, H2O.8, H2O.8, H2O.9 MG.12: 2 residues within 4Å: Chain B: V.263 Chain D: V.263 5 PLIP interactions: 1 interactions with chain D, 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: D:V.263, B:V.263, H2O.4, H2O.10, H2O.11

8 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.3: 6 residues within 4Å: Chain A: S.157, L.159, Y.170, F.202 Ligands: NAI.1, IPA.4 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Y.170 Hydrogen bonds: A:S.157, A:Y.170 IPA.4: 4 residues within 4Å: Chain A: S.167, Y.170, F.202 Ligands: IPA.3 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Y.170, A:F.202 Hydrogen bonds: A:G.107 IPA.6: 7 residues within 4Å: Chain B: S.157, I.158, L.159, Y.170, F.202 Ligands: NAI.5, IPA.7 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:I.158, B:L.159, B:Y.170, B:F.202 Hydrogen bonds: B:S.157, B:Y.170, B:Y.170 IPA.7: 5 residues within 4Å: Chain B: G.107, S.167, Y.170, F.202 Ligands: IPA.6 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:F.202 Hydrogen bonds: B:S.167 IPA.9: 6 residues within 4Å: Chain C: S.157, L.159, Y.170, F.202 Ligands: NAI.8, IPA.10 5 PLIP interactions: 5 interactions with chain C Hydrophobic interactions: C:L.159, C:F.202 Hydrogen bonds: C:S.157, C:Y.170, C:Y.170 IPA.10: 4 residues within 4Å: Chain C: G.107, G.108, S.167 Ligands: IPA.9 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:G.107, C:S.167 IPA.13: 6 residues within 4Å: Chain D: S.157, L.159, Y.170, F.202 Ligands: NAI.11, IPA.14 5 PLIP interactions: 5 interactions with chain D Hydrophobic interactions: D:L.159, D:F.202, D:F.202 Hydrogen bonds: D:S.157, D:Y.170 IPA.14: 6 residues within 4Å: Chain D: G.107, G.108, L.159, S.167, Y.170 Ligands: IPA.13 3 PLIP interactions: 3 interactions with chain D Hydrophobic interactions: D:L.159, D:Y.170 Hydrogen bonds: D:G.108

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, M. et al., Crystal structure of NADH bound carbonyl reductase from Streptomyces coelicolor. To Be Published

Release Date

2017-05-10

Peptides

Putative oxidoreductase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

C
G

D
H

Putative oxidoreductase

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