SMTL ID : 5h62.1 (1 other biounit)

Structure of Transferase mutant-C23S,C199S

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.66 Å

Oligo State

monomer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 7 residues within 4Å: Chain A: D.239, H.260, E.271, N.272, G.273, R.348 Ligands: UDP.4 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.271, A:N.272, A:G.273, A:R.348 Water bridges: A:N.338, A:N.338 EDO.2: 5 residues within 4Å: Chain A: D.109, N.135, S.136, W.202, Y.206 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.135, A:W.202, A:Y.206 Water bridges: A:N.135

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.3: 4 residues within 4Å: Chain A: D.241, N.338, S.340 Ligands: UDP.4 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.241, A:S.340, H2O.3 MN.5: 1 residues within 4Å: Chain A: D.322 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.322

1 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)

UDP.4: 18 residues within 4Å: Chain A: Q.64, W.65, F.66, Y.88, F.203, R.207, Y.237, D.239, A.240, D.241, N.338, S.340, S.345, S.346, W.347, R.348 Ligands: EDO.1, MN.3 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:W.347 Hydrogen bonds: A:Q.64, A:F.66, A:F.66, A:Y.88, A:Y.88, A:R.207, A:A.240, A:S.346, A:W.347 Water bridges: A:Q.64, A:R.72, A:D.241, A:N.338 Salt bridges: A:R.348 pi-Stacking: A:W.65, A:F.203

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Park, J.B. et al., Structural basis for arginine glycosylation of host substrates by bacterial effector proteins. Nat Commun (2018)

Release Date

2017-12-27

Peptides

Transferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Transferase

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