SMTL ID : 5xyk.1

Structure of Transferase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.57 Å

Oligo State

monomer

Ligands

1 x ARG: ARGININE(Non-covalent)

ARG.1: 10 residues within 4Å: Chain A: D.239, H.260, E.271, N.272, G.273, N.338, S.340, S.341 Ligands: MN.2, UDP.3 7 PLIP interactions: 7 interactions with chain A, Hydrogen bonds: A:N.272, A:N.272, A:G.273, A:N.338, A:S.340 Salt bridges: A:D.239, A:E.271

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 6 residues within 4Å: Chain A: D.239, D.241, N.338, S.340 Ligands: ARG.1, UDP.3 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.241, A:S.340

1 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)

UDP.3: 14 residues within 4Å: Chain A: Q.64, W.65, F.66, Y.88, F.203, R.207, Y.237, D.239, A.240, D.241, N.338, S.340 Ligands: ARG.1, MN.2 10 PLIP interactions: 8 interactions with chain A, 2 Ligand-Ligand interactions Hydrogen bonds: A:Q.64, A:F.66, A:F.66, A:Y.88, A:R.207, A:A.240, R.1 pi-Stacking: A:W.65, A:F.203 Salt bridges: R.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Park, J.B. et al., Structure of Transferase. To Be Published

Release Date

2018-07-11

Peptides

Putative cytoplasmic protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

Putative cytoplasmic protein

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