SMTL ID : 5h7g.1

Crystal structure of the BCL6 BTB domain in complex with F1324

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

hetero-2-2-mer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: R.36, R.40 Chain C: R.11, P.13 4 PLIP interactions: 2 interactions with chain C, 2 interactions with chain A Hydrogen bonds: C:P.13, A:R.40 Salt bridges: C:R.11, A:R.36 SO4.2: 1 residues within 4Å: Chain B: R.36 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.36

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sakamoto, K. et al., Discovery of high-affinity BCL6-binding peptide and its structure-activity relationship. Biochem. Biophys. Res. Commun. (2017)

Release Date

2016-12-07

Peptides

B-cell lymphoma 6 protein: AB
F1324 peptide: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

B-cell lymphoma 6 protein

F1324 peptide

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