SMTL ID : 5h7n.1 (1 other biounit)

Crystal structure of human NLRP12-PYD with a MBP tag

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x GLC- GLC- GLC- GLC: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose(Non-covalent)

GLC-GLC-GLC-GLC.1: 20 residues within 4Å: Chain A: N.13, D.15, K.16, K.43, E.45, E.46, W.63, A.64, D.66, R.67, E.112, E.154, P.155, Y.156, F.157, W.231, M.331, W.341, Y.342, R.345 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.43, A:K.43, A:E.45 Water bridges: A:K.43, A:Y.342

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: A.72, L.77, E.79, K.103, I.105 No protein-ligand interaction detected (PLIP) SO4.3: 3 residues within 4Å: Chain A: E.443, R.444, K.448 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.443, A:R.444 Salt bridges: A:K.448

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 4 residues within 4Å: Chain A: M.322, A.325, Q.326, I.330 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.328 EDO.5: 7 residues within 4Å: Chain A: A.169, F.170, Y.177, F.259, E.329, I.330, P.332 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:A.169, A:F.170, A:F.170, A:Y.177, A:E.329, A:I.330 EDO.6: 5 residues within 4Å: Chain A: E.383, G.417, P.418, L.419, E.420 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.417, A:L.419, A:E.420 EDO.7: 5 residues within 4Å: Chain A: S.271, P.272, N.273, K.274, E.275 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.271, A:K.274

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jin, T.C. et al., Design of an expression system to enhance MBP-mediated crystallization. Sci Rep (2017)

Release Date

2017-02-15

Peptides

NLRP12-PYD with MBP tag: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

NLRP12-PYD with MBP tag

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