SMTL ID : 5h7n.2 (1 other biounit)

Crystal structure of human NLRP12-PYD with a MBP tag

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x GLC- GLC- GLC- GLC: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose(Non-covalent)

GLC-GLC-GLC-GLC.1: 20 residues within 4Å: Chain A: N.13, D.15, K.16, K.43, E.45, E.46, W.63, A.64, D.66, R.67, E.112, E.154, P.155, Y.156, F.157, W.231, M.331, W.341, Y.342, R.345 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.45

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: P.409, W.410, G.411 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:W.410, A:G.411 Water bridges: A:I.408

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 4 residues within 4Å: Chain A: G.417, P.418, L.419, E.420 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.417, A:L.419, A:E.420 EDO.4: 6 residues within 4Å: Chain A: V.197, I.200, K.201, A.351, A.352, G.354 1 PLIP interactions: 1 interactions with chain A Water bridges: A:A.351 EDO.5: 3 residues within 4Å: Chain A: A.325, Q.326, G.328 No protein-ligand interaction detected (PLIP) EDO.7: 5 residues within 4Å: Chain A: Y.118, K.120, G.244, V.245, T.246 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.118, A:Y.118, A:K.120, A:T.246 Water bridges: A:V.245 EDO.8: 2 residues within 4Å: Chain A: E.432, R.436 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.436, A:R.436

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.6: 2 residues within 4Å: Chain A: A.216, K.220 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jin, T.C. et al., Design of an expression system to enhance MBP-mediated crystallization. Sci Rep (2017)

Release Date

2017-02-15

Peptides

NLRP12-PYD with MBP tag: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

NLRP12-PYD with MBP tag

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