SMTL ID : 5hbh.1

CDK8-CYCC IN COMPLEX WITH 5-{5-Chloro-4-[1-(2-methoxy-ethyl)-1,8-diaza-spiro[4.5]dec-8-yl]-pyridin-3-yl}-1-methyl-1,3-dihydro-benzo[c]isothiazole 2,2-dioxide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 5Y7: 5-[5-chloranyl-4-[1-(2-methoxyethyl)-1,8-diazaspiro[4.5]decan-8-yl]pyridin-3-yl]-1-methyl-3~{H}-2,1-benzothiazole 2,2-dioxide(Non-covalent)

5Y7.1: 15 residues within 4Å: Chain A: V.29, Y.34, V.37, A.52, K.54, F.99, D.100, A.102, D.105, H.108, A.157, L.160, D.175, F.178, R.358 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.37, A:L.160 Hydrogen bonds: A:A.102 Salt bridges: A:D.175 pi-Cation interactions: A:R.358

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: R.152, D.153, R.202, Y.213 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.202, A:Y.213 Water bridges: A:R.152, A:Y.201

3 x FMT: FORMIC ACID(Non-functional Binders)

FMT.3: 4 residues within 4Å: Chain A: M.261, Q.315, L.318, T.319 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.315 FMT.4: 6 residues within 4Å: Chain B: H.209, C.212, K.217, A.219, R.220, F.223 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:H.209, B:A.219 FMT.5: 5 residues within 4Å: Chain B: A.6, A.8, V.158, Y.159, R.163 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:A.6, B:R.163

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mallinger, A. et al., Discovery of Potent, Selective, and Orally Bioavailable Small-Molecule Modulators of the Mediator Complex-Associated Kinases CDK8 and CDK19. J.Med.Chem. (2016)

Release Date

2016-02-03

Peptides

Cyclin-dependent kinase 8: A
Cyclin-C: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Cyclin-dependent kinase 8

Cyclin-C

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