SMTL ID : 5hg8.1

EGFR (L858R, T790M, V948R) in complex with N-[3-({2-[(1-methyl-1H-pyrazol-4-yl)amino]-7H-pyrrolo[2,3-d]pyrimidin-4-yl}oxy)phenyl]prop-2-enamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.42 Å

Oligo State

monomer

Ligands

1 x 634: N-[3-({2-[(1-methyl-1H-pyrazol-4-yl)amino]-7H-pyrrolo[2,3-d]pyrimidin-4-yl}oxy)phenyl]propanamide(Covalent)

634.1: 16 residues within 4Å: Chain A: L.25, G.26, V.33, A.50, C.82, M.97, Q.98, L.99, M.100, P.101, G.103, C.104, D.107, R.148, L.151, F.163 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.25, A:R.148, A:L.151, A:F.163 Hydrogen bonds: A:Q.98, A:M.100, A:M.100 Water bridges: A:C.104, A:C.104, A:R.148

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: R.143, Y.176, A.178, E.179, G.180 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:E.179 Water bridges: A:R.143, A:R.143, A:R.165, A:R.165 Salt bridges: A:R.143, A:K.167 SO4.3: 2 residues within 4Å: Chain A: R.110, K.220 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.110, A:K.220

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 5 residues within 4Å: Chain A: T.247, I.248, D.249, R.284, Y.285 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:I.248, A:D.249, A:D.249, A:R.284

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cheng, H. et al., Discovery of 1-{(3R,4R)-3-[({5-Chloro-2-[(1-methyl-1H-pyrazol-4-yl)amino]-7H-pyrrolo[2,3-d]pyrimidin-4-yl}oxy)methyl]-4-methoxypyrrolidin-1-yl}prop-2-en-1-one (PF-06459988), a Potent, WT Sparing, Irreversible Inhibitor of T790M-Containing EGFR Mutants. J.Med.Chem. (2016)

Release Date

2016-02-03

Peptides

Epidermal growth factor receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Epidermal growth factor receptor

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