SMTL ID : 5hjk.1

Crystal Structure of Pyrococcus abyssi Trm5a complexed with SAH

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 18 residues within 4Å: Chain A: L.150, Y.151, F.184, R.193, F.210, A.211, G.212, P.215, Y.216, E.232, I.233, N.234, G.261, D.262, V.263, F.264, P.279, P.281 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:F.184 Hydrogen bonds: A:Y.151, A:F.210, A:G.212, A:I.233, A:D.262, A:V.263 Water bridges: A:F.184, A:F.184, A:R.193, A:Y.216, A:N.234 Salt bridges: A:R.193 pi-Stacking: A:F.210, A:F.210

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, C. et al., Crystal structures of the bifunctional tRNA methyltransferase Trm5a. Sci Rep (2016)

Release Date

2016-10-12

Peptides

tRNA (guanine(37)-N1)-methyltransferase Trm5a: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

tRNA (guanine(37)-N1)-methyltransferase Trm5a

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