SMTL ID : 5hjm.1

Crystal Structure of Pyrococcus abyssi Trm5a complexed with MTA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.76 Å

Oligo State

monomer

Ligands

1 x MTA: 5'-DEOXY-5'-METHYLTHIOADENOSINE(Non-covalent)

MTA.1: 14 residues within 4Å: Chain A: L.150, Y.151, R.152, F.184, F.210, G.212, E.232, I.233, N.234, G.261, D.262, V.263, F.264, P.281 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:Y.151, A:R.152, A:G.212, A:I.233, A:D.262, A:V.263 Water bridges: A:F.184, A:N.234 pi-Stacking: A:F.210, A:F.210

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 7 residues within 4Å: Chain A: V.108, I.113, H.147, R.154, L.180, F.185, P.187 7 PLIP interactions: 7 interactions with chain A Water bridges: A:D.106, A:H.147, A:R.154, A:R.154, A:F.185 Salt bridges: A:H.147, A:R.154

1 x HSL: HOMOSERINE LACTONE(Non-covalent)

HSL.3: 7 residues within 4Å: Chain A: V.284, D.285, L.287, Y.300, D.302, F.312, R.315 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:R.315 Hydrogen bonds: A:D.302

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, C. et al., Crystal structures of the bifunctional tRNA methyltransferase Trm5a. Sci Rep (2016)

Release Date

2016-10-12

Peptides

tRNA (guanine(37)-N1)-methyltransferase Trm5a: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

tRNA (guanine(37)-N1)-methyltransferase Trm5a

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