SMTL ID : 5hkg.1

Total chemical synthesis, refolding and crystallographic structure of a fully active immunophilin: calstabin 2 (FKBP12.6).

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x RAP: RAPAMYCIN IMMUNOSUPPRESSANT DRUG(Non-covalent)

RAP.1: 15 residues within 4Å: Chain A: Y.26, F.36, D.37, F.46, Q.53, E.54, V.55, I.56, F.59, Y.82, H.87, V.90, I.91, F.99 Ligands: EDO.5 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:Y.26, A:F.46, A:F.46, A:F.46, A:V.55, A:I.56, A:F.59, A:F.59, A:Y.82, A:V.90, A:I.91 Hydrogen bonds: A:Y.26, A:D.37, A:D.37, A:I.56, A:Y.82 Water bridges: A:Q.53

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 2 residues within 4Å: Chain A: H.25, N.43 Ligand excluded by PLIP CL.3: 3 residues within 4Å: Chain A: G.33, K.34, K.35 Ligand excluded by PLIP CL.4: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 6 residues within 4Å: Chain A: S.39, R.42, K.44, P.45, F.46 Ligands: RAP.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.42, A:R.42 EDO.6: 4 residues within 4Å: Chain A: T.14, Q.20, L.68, L.106 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.20, A:Q.20 EDO.7: 5 residues within 4Å: Chain A: Y.82, G.83, A.84, T.85 Ligands: EDO.8 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.84, A:T.85, A:T.85, A:T.85 EDO.8: 6 residues within 4Å: Chain A: P.78, D.79, G.83, A.84, N.94 Ligands: EDO.7 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:P.78, A:N.94 Water bridges: A:N.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bacchi, M. et al., Total chemical synthesis, refolding, and crystallographic structure of fully active immunophilin calstabin 2 (FKBP12.6). Protein Sci. (2016)

Release Date

2016-10-05

Peptides

Peptidyl-prolyl cis-trans isomerase FKBP1B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peptidyl-prolyl cis-trans isomerase FKBP1B

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