SMTL ID : 5htc.1

Crystal structure of haspin (GSG2) in complex with bisubstrate inhibitor ARC-3372

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x ALA- ARG- LYS- LYS- GLN- THR- 66N: ARC-3372 INHIBITOR(Non-covalent)

ALA-ARG-LYS-LYS-GLN-THR-66N.1: 15 residues within 4Å: Chain A: V.53, N.81, D.208, H.210, G.212, N.213, D.246, T.248, L.249, D.266, D.268, L.269, Q.277, Y.281 Ligands: 66M.6 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:L.249, A:L.269, A:L.269 Hydrogen bonds: A:N.213, A:N.213, A:N.213, A:D.266, A:Q.277, A:Q.277 Water bridges: A:V.53, A:N.81, A:D.208, A:D.208, A:G.212, A:G.212 Salt bridges: A:D.246

2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.2: 5 residues within 4Å: Chain A: E.287, Y.298, L.341, N.342, F.343 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Y.298 Hydrogen bonds: A:N.342 Water bridges: A:Y.298, A:S.344 MPD.3: 1 residues within 4Å: Chain A: P.130 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:P.130

1 x NA: SODIUM ION(Non-functional Binders)

NA.4: 6 residues within 4Å: Chain A: E.113, G.114, F.115, E.165, V.242, S.243 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.165

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.5: 4 residues within 4Å: Chain A: Y.226, L.228, K.231, S.233 No protein-ligand interaction detected (PLIP)

1 x 66M: (2R)-2-{[6-({[(2S,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]carbonyl}amino)hexanoyl]amino}butanedioic acid (non-preferred name)(Non-covalent)

66M.6: 25 residues within 4Å: Chain A: I.49, G.50, E.51, G.52, V.53, F.54, G.55, V.57, A.68, K.70, I.116, F.164, E.165, F.166, G.167, G.168, D.170, Q.173, G.212, L.215, I.245, D.246, T.248 Ligands: ALA-ARG-LYS-LYS-GLN-THR-66N.1, ALA-ARG-LYS-LYS-GLN-THR-66N.1 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:V.57, A:T.248 Hydrogen bonds: A:E.51, A:E.51, A:F.54, A:G.55, A:E.165, A:G.167, A:D.170, A:Q.173, A:G.212 Water bridges: A:I.49, A:V.53, A:K.70, A:K.70, A:D.170, A:D.170, A:Q.173, A:D.208

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lavogina, D. et al., Co-crystal structures of the protein kinase haspin with bisubstrate inhibitors. Acta Crystallogr.,Sect.F (2016)

Release Date

2016-03-16

Peptides

Serine/threonine-protein kinase haspin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Serine/threonine-protein kinase haspin

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