SMTL ID : 6z5d.1

Crystal structure of haspin (GSG2) in complex with macrocycle ODS2004082

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 4 residues within 4Å: Chain A: I.96, R.254, I.257, V.259 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:I.96, A:R.254, A:I.257, A:V.259 MPD.2: 5 residues within 4Å: Chain A: E.287, Y.298, L.341, N.342, F.343 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.341

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 4 residues within 4Å: Chain A: Y.226, L.228, K.231, S.233 No protein-ligand interaction detected (PLIP)

1 x SIN: SUCCINIC ACID(Non-covalent)

SIN.4: 4 residues within 4Å: Chain A: F.88, V.121, H.122, C.123 1 PLIP interactions: 1 interactions with chain A Water bridges: A:C.123

1 x Q8Q: 11-methyl-8,11,14,18,19,22-hexazatetracyclo[13.5.2.12,6.018,21]tricosa-1(21),2(23),3,5,15(22),16,19-heptaen-7-one(Non-covalent)

Q8Q.5: 16 residues within 4Å: Chain A: I.49, G.50, E.51, F.54, V.57, A.68, K.70, I.116, F.164, E.165, F.166, G.167, G.168, L.215, I.245, D.246 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:I.49, A:A.68, A:I.116, A:F.164, A:F.164, A:L.215, A:L.215, A:I.245, A:I.245, A:I.245 Hydrogen bonds: A:G.167 Water bridges: A:I.49, A:Q.173

1 x NA: SODIUM ION(Non-functional Binders)

NA.6: 5 residues within 4Å: Chain A: E.113, F.115, I.116, G.117, E.165 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.117, A:E.165 Water bridges: A:E.113

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chaikuad, A. et al., Crystal structure of haspin (GSG2) in complex with macrocycle ODS2004082. To Be Published

Release Date

2020-06-03

Peptides

Serine/threonine-protein kinase haspin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Serine/threonine-protein kinase haspin

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