- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.15 Å
- Oligo State
- hetero-4-4-mer
- Ligands
- 66 x GOL: GLYCEROL(Non-functional Binders)
- 16 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.3: 8 residues within 4Å:- Chain A: E.73, R.194, T.197, A.251, D.252, I.253, Y.254, H.287
Ligand excluded by PLIPPEG.4: 6 residues within 4Å:- Chain A: K.80, P.130, V.131, I.132, K.133
- Ligands: TRP.9
Ligand excluded by PLIPPEG.20: 8 residues within 4Å:- Chain B: E.73, R.194, T.197, A.251, D.252, I.253, Y.254, H.287
Ligand excluded by PLIPPEG.45: 5 residues within 4Å:- Chain C: K.80, D.83, A.89, P.130, I.132
Ligand excluded by PLIPPEG.46: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPPEG.47: 1 residues within 4Å:- Ligands: GOL.42
Ligand excluded by PLIPPEG.70: 4 residues within 4Å:- Chain C: P.72
- Chain D: G.200, T.201, R.206
Ligand excluded by PLIPPEG.71: 2 residues within 4Å:- Chain D: V.15
- Ligands: GOL.66
Ligand excluded by PLIPPEG.72: 1 residues within 4Å:- Chain D: E.276
Ligand excluded by PLIPPEG.73: 4 residues within 4Å:- Chain D: R.212, V.215, A.216, A.228
Ligand excluded by PLIPPEG.74: 5 residues within 4Å:- Chain D: Q.79, A.82, F.337, E.338, P.339
Ligand excluded by PLIPPEG.75: 2 residues within 4Å:- Chain D: E.324
- Ligands: GOL.57
Ligand excluded by PLIPPEG.99: 2 residues within 4Å:- Ligands: GOL.86, GOL.93
Ligand excluded by PLIPPEG.109: 6 residues within 4Å:- Chain G: K.33, T.36, K.37, Q.40
- Chain H: I.70
- Ligands: GOL.104
Ligand excluded by PLIPPEG.110: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPPEG.111: 2 residues within 4Å:- Ligands: GOL.103, PGE.112
Ligand excluded by PLIP- 14 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
PGE.5: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)PGE.48: 6 residues within 4Å:- Chain C: I.180
- Chain D: I.180, R.181
- Ligands: GOL.30, GOL.33, PO4.83
No protein-ligand interaction detected (PLIP)PGE.49: 6 residues within 4Å:- Chain C: E.106, R.110
- Chain D: V.70, A.71, L.271, L.284
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:A.71
PGE.50: 7 residues within 4Å:- Chain C: V.70, A.71, R.270, L.271, L.284
- Chain D: E.106, R.110
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:A.71, C:L.271
PGE.51: 5 residues within 4Å:- Chain C: F.101, R.181, N.185
- Chain D: V.65
- Ligands: GOL.33
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:F.101, C:R.181, C:N.185
PGE.52: 1 residues within 4Å:- Chain C: W.13
No protein-ligand interaction detected (PLIP)PGE.76: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)PGE.77: 1 residues within 4Å:- Chain D: H.6
No protein-ligand interaction detected (PLIP)PGE.89: 4 residues within 4Å:- Chain E: K.37
- Ligands: GOL.86, GOL.87, PGE.90
1 PLIP interactions:1 interactions with chain E- Hydrogen bonds: E:K.37
PGE.90: 1 residues within 4Å:- Ligands: PGE.89
No protein-ligand interaction detected (PLIP)PGE.91: 3 residues within 4Å:- Chain E: D.30, R.34
- Chain F: E.27
2 PLIP interactions:1 interactions with chain F, 1 interactions with chain E- Hydrogen bonds: F:E.27, E:R.34
PGE.100: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)PGE.101: 2 residues within 4Å:- Chain F: R.67
- Ligands: GOL.32
2 PLIP interactions:2 interactions with chain F- Water bridges: F:R.67, F:R.67
PGE.112: 3 residues within 4Å:- Ligands: GOL.104, GOL.106, PEG.111
No protein-ligand interaction detected (PLIP)- 4 x MN: MANGANESE (II) ION(Non-covalent)
MN.6: 4 residues within 4Å:- Chain A: C.97, H.379, E.421, D.451
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:C.97, A:H.379, A:E.421, A:D.451, H2O.4
MN.22: 4 residues within 4Å:- Chain B: C.97, H.379, E.421, D.451
5 PLIP interactions:5 interactions with chain B- Metal complexes: B:C.97, B:H.379, B:E.421, B:E.421, B:D.451
MN.54: 4 residues within 4Å:- Chain C: C.97, H.379, E.421, D.451
5 PLIP interactions:4 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:C.97, C:H.379, C:E.421, C:D.451, H2O.16
MN.81: 4 residues within 4Å:- Chain D: C.97, H.379, E.421, D.451
5 PLIP interactions:4 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:C.97, D:H.379, D:E.421, D:D.451, H2O.22
- 6 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.7: 6 residues within 4Å:- Chain A: G.292, E.293, R.294, K.316, R.347, H.379
8 PLIP interactions:8 interactions with chain A- Hydrogen bonds: A:E.293, A:R.294
- Water bridges: A:R.294, A:R.294, A:K.316
- Salt bridges: A:K.316, A:R.347, A:H.379
PO4.8: 3 residues within 4Å:- Chain A: R.145, S.146, R.294
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:S.146, A:S.146, A:R.294
- Salt bridges: A:R.145
PO4.23: 6 residues within 4Å:- Chain B: G.292, E.293, R.294, K.316, R.347, H.379
8 PLIP interactions:8 interactions with chain B- Hydrogen bonds: B:E.293
- Water bridges: B:W.290, B:K.316, B:K.316
- Salt bridges: B:R.294, B:K.316, B:R.347, B:H.379
PO4.55: 6 residues within 4Å:- Chain C: G.292, E.293, R.294, K.316, R.347, H.379
12 PLIP interactions:12 interactions with chain C- Hydrogen bonds: C:E.293, C:D.376, C:D.376
- Water bridges: C:E.258, C:R.294, C:R.294, C:K.316, C:K.316
- Salt bridges: C:R.294, C:K.316, C:R.347, C:H.379
PO4.82: 6 residues within 4Å:- Chain D: G.292, E.293, R.294, K.316, R.347, H.379
9 PLIP interactions:9 interactions with chain D- Hydrogen bonds: D:E.293
- Water bridges: D:R.294, D:R.294, D:R.294, D:K.316
- Salt bridges: D:R.294, D:K.316, D:R.347, D:H.379
PO4.83: 4 residues within 4Å:- Chain D: F.101, R.181, N.185
- Ligands: PGE.48
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:N.185, D:N.185
- Salt bridges: D:R.181
- 4 x TRP: TRYPTOPHAN(Non-covalent)
TRP.9: 14 residues within 4Å:- Chain A: L.117, A.120, V.121, T.124, K.133, A.202, L.207, S.247, L.248, A.250, A.251
- Chain D: A.240, C.241
- Ligands: PEG.4
13 PLIP interactions:11 interactions with chain A, 2 Ligand-Ligand interactions- Hydrophobic interactions: A:A.120, A:V.121, A:L.207
- Hydrogen bonds: A:A.202, A:S.247, W.9, W.9
- Water bridges: A:K.133, A:K.133, A:K.133, A:K.133
- Salt bridges: A:K.133
- pi-Cation interactions: A:K.133
TRP.24: 14 residues within 4Å:- Chain B: L.117, A.120, V.121, T.124, K.133, A.202, L.207, S.247, L.248, A.250, A.251
- Chain C: A.240, C.241
- Ligands: GOL.11
9 PLIP interactions:8 interactions with chain B, 1 interactions with chain C- Hydrophobic interactions: B:L.117, B:A.120, B:L.207
- Hydrogen bonds: B:A.202, B:S.247, C:C.241
- Water bridges: B:K.133, B:K.133
- Salt bridges: B:K.133
TRP.56: 13 residues within 4Å:- Chain B: A.240, C.241
- Chain C: L.117, A.120, V.121, T.124, K.133, A.202, L.207, S.247, L.248, A.250, A.251
12 PLIP interactions:10 interactions with chain C, 2 Ligand-Ligand interactions- Hydrophobic interactions: C:A.120, C:V.121, C:L.207
- Hydrogen bonds: C:A.202, C:S.247, W.56, W.56
- Water bridges: C:K.133, C:K.133, C:K.133
- Salt bridges: C:K.133
- pi-Cation interactions: C:K.133
TRP.84: 14 residues within 4Å:- Chain A: A.240, C.241
- Chain D: L.117, A.120, V.121, T.124, K.133, A.202, L.207, S.247, L.248, A.250, A.251
- Ligands: GOL.69
9 PLIP interactions:7 interactions with chain D, 2 Ligand-Ligand interactions- Hydrophobic interactions: D:A.120, D:L.207
- Hydrogen bonds: D:A.202, D:S.247, W.84, W.84
- Water bridges: D:K.133
- Salt bridges: D:K.133
- pi-Cation interactions: D:K.133
- 5 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
PG4.21: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)PG4.53: 4 residues within 4Å:- Chain C: A.82, F.337, E.338, P.339
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:F.337
- Water bridges: C:N.86
PG4.78: 12 residues within 4Å:- Chain C: S.198, R.249
- Chain D: E.73, E.76, M.190, R.194, T.197, A.251, D.252, I.253, Y.254
- Ligands: GOL.67
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:T.197, D:A.251, D:I.253
PG4.79: 4 residues within 4Å:- Chain D: K.45, E.293, R.296
- Ligands: GOL.58
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:R.296
- Water bridges: D:Q.46, D:R.296
PG4.80: 11 residues within 4Å:- Chain C: R.110, K.114, G.200, T.201, R.206, W.210
- Chain D: P.72, T.273, D.274, E.275
- Ligands: GOL.61
3 PLIP interactions:1 interactions with chain D, 2 interactions with chain C- Hydrogen bonds: D:D.274, C:R.206
- Water bridges: C:T.201
- 4 x TSA: 8-HYDROXY-2-OXA-BICYCLO[3.3.1]NON-6-ENE-3,5-DICARBOXYLIC ACID(Non-covalent)
TSA.92: 12 residues within 4Å:- Chain E: R.35, S.39, I.42, R.46, L.54, V.55, R.58, E.59, I.62, L.82, R.86
- Chain F: R.18
13 PLIP interactions:12 interactions with chain E, 1 interactions with chain F- Hydrophobic interactions: E:R.58, E:E.59, E:R.86
- Hydrogen bonds: E:S.39, E:R.46, E:R.46, E:V.55, E:V.55
- Water bridges: E:G.43, E:R.58
- Salt bridges: E:R.35, E:R.46, F:R.18
TSA.102: 12 residues within 4Å:- Chain E: R.18
- Chain F: R.35, S.39, I.42, R.46, L.54, V.55, R.58, E.59, I.62, L.82, R.86
14 PLIP interactions:13 interactions with chain F, 1 interactions with chain E- Hydrophobic interactions: F:R.58, F:E.59, F:L.82, F:R.86
- Hydrogen bonds: F:S.39, F:S.39, F:R.46, F:R.46, F:V.55, F:E.59
- Water bridges: F:G.43
- Salt bridges: F:R.35, F:R.46, E:R.18
TSA.113: 12 residues within 4Å:- Chain G: R.35, S.39, I.42, R.46, L.54, V.55, R.58, E.59, I.62, L.82, R.86
- Chain H: R.18
14 PLIP interactions:13 interactions with chain G, 1 interactions with chain H- Hydrophobic interactions: G:R.58, G:E.59, G:R.86
- Hydrogen bonds: G:S.39, G:S.39, G:R.46, G:R.46, G:V.55, G:V.55, G:E.59
- Water bridges: G:G.43
- Salt bridges: G:R.35, G:R.46, H:R.18
TSA.119: 12 residues within 4Å:- Chain G: R.18
- Chain H: R.35, S.39, I.42, R.46, L.54, V.55, R.58, E.59, I.62, L.82, R.86
14 PLIP interactions:13 interactions with chain H, 1 interactions with chain G- Hydrophobic interactions: H:R.58, H:E.59, H:L.82, H:R.86
- Hydrogen bonds: H:S.39, H:R.46, H:R.46, H:V.55, H:V.55
- Water bridges: H:G.43, H:R.58
- Salt bridges: H:R.35, H:R.46, G:R.18
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Burschowsky, D. et al., Inter-Enzyme Allosteric Regulation of Chorismate Mutase in Corynebacterium glutamicum: Structural Basis of Feedback Activation by Trp. Biochemistry (2018)
- Release Date
- 2017-08-02
- Peptides
- 3-Deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase: ABCD
Chorismate mutase: EFGH - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
H
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.15 Å
- Oligo State
- hetero-4-4-mer
- Ligands
- 66 x GOL: GLYCEROL(Non-functional Binders)
- 16 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 14 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- 4 x MN: MANGANESE (II) ION(Non-covalent)
- 6 x PO4: PHOSPHATE ION(Non-functional Binders)
- 4 x TRP: TRYPTOPHAN(Non-covalent)
- 5 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
- 4 x TSA: 8-HYDROXY-2-OXA-BICYCLO[3.3.1]NON-6-ENE-3,5-DICARBOXYLIC ACID(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Burschowsky, D. et al., Inter-Enzyme Allosteric Regulation of Chorismate Mutase in Corynebacterium glutamicum: Structural Basis of Feedback Activation by Trp. Biochemistry (2018)
- Release Date
- 2017-08-02
- Peptides
- 3-Deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase: ABCD
Chorismate mutase: EFGH - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
H