SMTL ID : 5hwj.1

Crystal structure of keto-deoxy-D-galactarate dehydratase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

homo-tetramer

Ligands

7 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 11 residues within 4Å: Chain A: W.39, Y.43, F.217, V.218, P.219, G.220, L.221, Q.270, H.299, K.300, R.301 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.43, A:G.220, A:L.221 Water bridges: A:Y.43 GOL.2: 9 residues within 4Å: Chain A: G.11, L.186, M.187, Y.188, L.189, G.206, F.207, T.208, T.209 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:L.186, A:Y.188, A:T.208, A:T.208, A:T.209 GOL.4: 9 residues within 4Å: Chain B: G.11, L.186, M.187, Y.188, L.189, G.206, F.207, T.208, T.209 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:L.186, B:Y.188, B:T.208, B:T.208, B:T.209 GOL.5: 11 residues within 4Å: Chain B: W.39, Y.43, F.217, V.218, P.219, G.220, L.221, Q.270, H.299, K.300, R.301 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Y.43, B:G.220, B:L.221 GOL.6: 9 residues within 4Å: Chain A: L.114, I.115 Chain B: G.53, T.54, F.58, R.142, P.193, A.259, V.260 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.142, B:R.142 Water bridges: B:T.54, B:T.54 GOL.7: 9 residues within 4Å: Chain C: G.11, L.186, M.187, Y.188, L.189, G.206, F.207, T.208, T.209 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:Y.188, C:Y.188, C:T.208, C:T.208, C:T.209 GOL.9: 9 residues within 4Å: Chain D: G.11, L.186, M.187, Y.188, L.189, G.206, F.207, T.208, T.209 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:L.186, D:Y.188, D:T.208, D:T.208, D:T.209

3 x FMT: FORMIC ACID(Non-functional Binders)

FMT.3: 5 residues within 4Å: Chain A: G.53, F.58, R.142, V.260 Chain B: I.115 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.142, A:R.142 Water bridges: A:T.54, A:T.54 FMT.8: 6 residues within 4Å: Chain C: G.53, T.54, F.58, R.142, V.260 Chain D: I.115 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:R.142, C:R.142 Water bridges: C:T.54 FMT.10: 5 residues within 4Å: Chain C: I.115 Chain D: G.53, F.58, R.142, V.260 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:G.53, D:R.142, D:R.142

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Taberman, H. et al., Structure and function of a decarboxylating Agrobacterium tumefaciens keto-deoxy-d-galactarate dehydratase. Biochemistry (2014)

Release Date

2016-03-23

Peptides

Probable 5-dehydro-4-deoxyglucarate dehydratase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Probable 5-dehydro-4-deoxyglucarate dehydratase

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