SMTL ID : 5i2s.1

PREFUSION FORM OF THE VESICULAR STOMATITIS VIRUS GLYCOPROTEIN G ECTODOMAIN

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-trimer

Ligands

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 1 residues within 4Å: Chain A: N.163 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 1 residues within 4Å: Chain B: N.163 No protein-ligand interaction detected (PLIP) NAG-NAG.9: 1 residues within 4Å: Chain C: N.163 No protein-ligand interaction detected (PLIP)

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 1 residues within 4Å: Chain A: N.320 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.320 NAG.6: 1 residues within 4Å: Chain B: N.320 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.320 NAG.10: 1 residues within 4Å: Chain C: N.320 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.320

6 x YB: YTTERBIUM (III) ION(Non-covalent)

YB.3: 5 residues within 4Å: Chain A: E.286 Chain B: E.286 Chain C: E.286 Ligands: YB.7, YB.11 3 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B, 1 interactions with chain C Metal complexes: A:E.286, B:E.286, C:E.286 YB.4: 1 residues within 4Å: Chain A: E.191 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.191 YB.7: 5 residues within 4Å: Chain A: E.286 Chain B: E.286 Chain C: E.286 Ligands: YB.3, YB.11 3 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B, 1 interactions with chain C Metal complexes: A:E.286, B:E.286, C:E.286 YB.8: 1 residues within 4Å: Chain B: E.191 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:E.191 YB.11: 5 residues within 4Å: Chain A: E.286 Chain B: E.286 Chain C: E.286 Ligands: YB.3, YB.7 3 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B, 1 interactions with chain C Metal complexes: A:E.286, B:E.286, C:E.286 YB.12: 1 residues within 4Å: Chain C: E.191 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:E.191

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Roche, S. et al., Structure of the prefusion form of the vesicular stomatitis virus glycoprotein G. Science (2007)

Release Date

2016-03-02

Peptides

Glycoprotein G: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Glycoprotein G

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