SMTL ID : 5i3p.1

DENGUE SEROTYPE 3 RNA-DEPENDENT RNA POLYMERASE BOUND TO COMPOUND 27

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.447, H.449, C.463, C.582 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.447, A:H.449, A:C.463, A:C.582 ZN.2: 4 residues within 4Å: Chain A: E.172, H.176, C.181, C.184 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.172, A:H.176, A:C.181, A:C.184

1 x 68T: 5-[5-(3-hydroxyprop-1-yn-1-yl)thiophen-2-yl]-2,4-dimethoxy-N-[(3-methoxyphenyl)sulfonyl]benzamide(Non-covalent)

68T.3: 18 residues within 4Å: Chain A: L.246, H.247, C.444, S.445, H.446, R.464, R.472, M.496, M.500, Y.501, T.529, W.530, S.531, H.533, A.534, H.535, Q.537, W.538 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:L.246, A:W.538 Hydrogen bonds: A:H.247, A:S.445, A:R.464, A:R.464, A:T.529, A:W.530, A:S.531, A:H.535, A:Q.537, A:Q.537 Water bridges: A:R.472

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lim, S.P. et al., Potent Allosteric Dengue Virus NS5 Polymerase Inhibitors: Mechanism of Action and Resistance Profiling. Plos Pathog. (2016)

Release Date

2016-07-06

Peptides

Genome polyprotein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Genome polyprotein

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