SMTL ID : 5i68.1

Alcohol oxidase from Pichia pastoris

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

homo-octamer

Ligands

8 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 1 residues within 4Å: Chain A: C.568 No protein-ligand interaction detected (PLIP) MG.3: 1 residues within 4Å: Chain B: C.568 No protein-ligand interaction detected (PLIP) MG.5: 1 residues within 4Å: Chain C: C.568 No protein-ligand interaction detected (PLIP) MG.7: 1 residues within 4Å: Chain D: C.568 No protein-ligand interaction detected (PLIP) MG.9: 1 residues within 4Å: Chain E: C.568 No protein-ligand interaction detected (PLIP) MG.11: 1 residues within 4Å: Chain F: C.568 No protein-ligand interaction detected (PLIP) MG.13: 1 residues within 4Å: Chain G: C.568 No protein-ligand interaction detected (PLIP) MG.15: 1 residues within 4Å: Chain H: C.568 No protein-ligand interaction detected (PLIP)

8 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.2: 30 residues within 4Å: Chain A: G.13, G.14, G.15, S.16, S.17, E.38, A.39, M.59, A.87, N.88, V.89, G.92, G.93, I.96, N.97, F.98, M.99, M.100, K.226, V.227, S.267, C.268, G.269, S.272, V.276, W.566, L.606, N.616, T.617, Y.618 27 PLIP interactions: 27 interactions with chain A Hydrophobic interactions: A:I.96, A:F.98, A:W.566, A:W.566, A:W.566, A:W.566 Hydrogen bonds: A:G.14, A:G.14, A:S.16, A:S.16, A:S.17, A:A.39, A:A.87, A:G.92, A:G.93, A:F.98, A:M.100, A:M.100, A:V.227, A:V.227, A:S.272, A:R.279, A:W.566, A:L.606, A:T.617, A:T.617, A:Y.618 FAD.4: 30 residues within 4Å: Chain B: G.13, G.14, G.15, S.16, S.17, E.38, A.39, M.59, A.87, N.88, V.89, G.92, G.93, I.96, N.97, F.98, M.99, M.100, K.226, V.227, S.267, C.268, G.269, S.272, V.276, W.566, L.606, N.616, T.617, Y.618 27 PLIP interactions: 27 interactions with chain B Hydrophobic interactions: B:I.96, B:F.98, B:W.566, B:W.566, B:W.566, B:W.566 Hydrogen bonds: B:G.14, B:G.14, B:S.16, B:S.16, B:S.17, B:A.39, B:A.87, B:G.92, B:G.93, B:F.98, B:M.100, B:M.100, B:V.227, B:V.227, B:S.272, B:R.279, B:W.566, B:L.606, B:T.617, B:T.617, B:Y.618 FAD.6: 30 residues within 4Å: Chain C: G.13, G.14, G.15, S.16, S.17, E.38, A.39, M.59, A.87, N.88, V.89, G.92, G.93, I.96, N.97, F.98, M.99, M.100, K.226, V.227, S.267, C.268, G.269, S.272, V.276, W.566, L.606, N.616, T.617, Y.618 27 PLIP interactions: 27 interactions with chain C Hydrophobic interactions: C:I.96, C:F.98, C:W.566, C:W.566, C:W.566, C:W.566 Hydrogen bonds: C:G.14, C:G.14, C:S.16, C:S.16, C:S.17, C:A.39, C:A.87, C:G.92, C:G.93, C:F.98, C:M.100, C:M.100, C:V.227, C:V.227, C:S.272, C:R.279, C:W.566, C:L.606, C:T.617, C:T.617, C:Y.618 FAD.8: 30 residues within 4Å: Chain D: G.13, G.14, G.15, S.16, S.17, E.38, A.39, M.59, A.87, N.88, V.89, G.92, G.93, I.96, N.97, F.98, M.99, M.100, K.226, V.227, S.267, C.268, G.269, S.272, V.276, W.566, L.606, N.616, T.617, Y.618 27 PLIP interactions: 27 interactions with chain D Hydrophobic interactions: D:I.96, D:F.98, D:W.566, D:W.566, D:W.566, D:W.566 Hydrogen bonds: D:G.14, D:G.14, D:S.16, D:S.16, D:S.17, D:A.39, D:A.87, D:G.92, D:G.93, D:F.98, D:M.100, D:M.100, D:V.227, D:V.227, D:S.272, D:R.279, D:W.566, D:L.606, D:T.617, D:T.617, D:Y.618 FAD.10: 30 residues within 4Å: Chain E: G.13, G.14, G.15, S.16, S.17, E.38, A.39, M.59, A.87, N.88, V.89, G.92, G.93, I.96, N.97, F.98, M.99, M.100, K.226, V.227, S.267, C.268, G.269, S.272, V.276, W.566, L.606, N.616, T.617, Y.618 27 PLIP interactions: 27 interactions with chain E Hydrophobic interactions: E:I.96, E:F.98, E:W.566, E:W.566, E:W.566, E:W.566 Hydrogen bonds: E:G.14, E:G.14, E:S.16, E:S.16, E:S.17, E:E.38, E:A.39, E:A.87, E:G.92, E:G.93, E:F.98, E:M.100, E:M.100, E:V.227, E:V.227, E:S.272, E:R.279, E:W.566, E:L.606, E:T.617, E:Y.618 FAD.12: 30 residues within 4Å: Chain F: G.13, G.14, G.15, S.16, S.17, E.38, A.39, M.59, A.87, N.88, V.89, G.92, G.93, I.96, N.97, F.98, M.99, M.100, K.226, V.227, S.267, C.268, G.269, S.272, V.276, W.566, L.606, N.616, T.617, Y.618 27 PLIP interactions: 27 interactions with chain F Hydrophobic interactions: F:I.96, F:F.98, F:W.566, F:W.566, F:W.566, F:W.566 Hydrogen bonds: F:G.14, F:G.14, F:S.16, F:S.16, F:S.17, F:E.38, F:A.39, F:A.87, F:G.92, F:G.93, F:F.98, F:M.100, F:M.100, F:V.227, F:V.227, F:S.272, F:R.279, F:W.566, F:L.606, F:T.617, F:Y.618 FAD.14: 30 residues within 4Å: Chain G: G.13, G.14, G.15, S.16, S.17, E.38, A.39, M.59, A.87, N.88, V.89, G.92, G.93, I.96, N.97, F.98, M.99, M.100, K.226, V.227, S.267, C.268, G.269, S.272, V.276, W.566, L.606, N.616, T.617, Y.618 27 PLIP interactions: 27 interactions with chain G Hydrophobic interactions: G:I.96, G:F.98, G:W.566, G:W.566, G:W.566, G:W.566 Hydrogen bonds: G:G.14, G:G.14, G:S.16, G:S.16, G:S.17, G:E.38, G:A.39, G:A.87, G:G.92, G:G.93, G:F.98, G:M.100, G:M.100, G:V.227, G:V.227, G:S.272, G:R.279, G:W.566, G:L.606, G:T.617, G:Y.618 FAD.16: 30 residues within 4Å: Chain H: G.13, G.14, G.15, S.16, S.17, E.38, A.39, M.59, A.87, N.88, V.89, G.92, G.93, I.96, N.97, F.98, M.99, M.100, K.226, V.227, S.267, C.268, G.269, S.272, V.276, W.566, L.606, N.616, T.617, Y.618 27 PLIP interactions: 27 interactions with chain H Hydrophobic interactions: H:I.96, H:F.98, H:W.566, H:W.566, H:W.566, H:W.566 Hydrogen bonds: H:G.14, H:G.14, H:S.16, H:S.16, H:S.17, H:E.38, H:A.39, H:A.87, H:G.92, H:G.93, H:F.98, H:M.100, H:M.100, H:V.227, H:V.227, H:S.272, H:R.279, H:W.566, H:L.606, H:T.617, H:Y.618

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vonck, J. et al., Structure of Alcohol Oxidase from Pichia pastoris by Cryo-Electron Microscopy. Plos One (2016)

Release Date

2016-08-03

Peptides

Alcohol oxidase 1: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

G
A

H
A

Alcohol oxidase 1

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