SMTL ID : 5ia0.3 (2 other biounits)

Crystal Structure of Ephrin A2 (EphA2) Receptor Protein Kinase with alisertib (MLN8237)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x A5B: alisertib(Non-covalent)

A5B.1: 17 residues within 4Å: Chain A: I.25, A.27, V.33, A.50, K.52, E.69, Y.100, M.101, E.102, G.104, K.108, R.149, N.150, L.152, S.162, D.163 Ligands: EDO.3 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:I.25, A:V.33, A:A.50, A:L.152, A:D.163 Hydrogen bonds: A:M.101, A:M.101, A:S.162 Water bridges: A:K.52 Salt bridges: A:K.108 Halogen bonds: A:A.27

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 7 residues within 4Å: Chain A: F.10, T.11, T.12, G.74, L.84, E.85, G.86 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.12, A:T.12, A:G.74 EDO.3: 4 residues within 4Å: Chain A: K.23, I.25, Y.100 Ligands: A5B.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.23, A:Y.100, A:Y.100 EDO.4: 2 residues within 4Å: Chain A: R.144, S.167 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.144 Water bridges: A:R.144 EDO.5: 5 residues within 4Å: Chain A: A.137, N.138, K.269, F.270, A.271 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:F.270, A:A.271 Water bridges: A:S.202 EDO.6: 4 residues within 4Å: Chain A: Q.258, R.266, P.268, D.272 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.258, A:D.272

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Heinzlmeir, S. et al., Chemical Proteomics and Structural Biology Define EPHA2 Inhibition by Clinical Kinase Drugs. ACS Chem. Biol. (2016)

Release Date

2016-11-09

Peptides

Ephrin type-A receptor 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Ephrin type-A receptor 2

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