SMTL ID : 6fnh.2 (2 other biounits)

Crystal Structure of Ephrin A2 (EphA2) Receptor Protein Kinase with a pyrazolo[3,4-d]pyrimidine fragment of NVP-BHG712

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.38 Å

Oligo State

monomer

Ligands

1 x DXK: 1-methyl-6-pyridin-3-yl-pyrazolo[3,4-d]pyrimidin-4-amine(Non-covalent)

DXK.1: 9 residues within 4Å: Chain A: I.25, A.27, V.33, A.50, T.98, E.99, Y.100, M.101, L.152 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:V.33, A:V.33, A:A.50, A:L.152 Hydrogen bonds: A:T.98, A:M.101 Water bridges: A:A.27, A:K.52, A:K.52

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 1 residues within 4Å: Chain A: N.156 2 PLIP interactions: 2 interactions with chain A Water bridges: A:G.124, A:G.124 EDO.3: 3 residues within 4Å: Chain A: A.176, K.184, I.185 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:I.185 EDO.4: 3 residues within 4Å: Chain A: K.90, Y.91 Ligands: EDO.5 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.90 EDO.5: 2 residues within 4Å: Chain A: Y.91 Ligands: EDO.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.91, A:Y.91

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Troster, A. et al., NVP-BHG712: Effects of Regioisomers on the Affinity and Selectivity toward the EPHrin Family. ChemMedChem (2018)

Release Date

2018-08-08

Peptides

Ephrin type-A receptor 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Ephrin type-A receptor 2

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