SMTL ID : 5ijr.1 (1 other biounit)

X-ray structure of neuropilin-1 b1 domain complexed with Arg-1 ligand.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.52 Å

Oligo State

monomer

Ligands

1 x HRG: L-HOMOARGININE(Non-covalent)

HRG.1: 10 residues within 4Å: Chain A: Y.26, W.30, T.45, D.49, S.75, E.77, T.78, Y.82, G.143, I.144 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:Y.26, A:W.30 Hydrogen bonds: A:T.45, A:T.45, A:S.75 Water bridges: A:N.29, A:W.30, A:N.42, A:N.42, A:K.76, A:E.77, A:T.78 Salt bridges: A:D.49

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mota, F. et al., Architecture and hydration of the arginine-binding site of neuropilin-1. FEBS J. (2018)

Release Date

2017-03-29

Peptides

Neuropilin-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Neuropilin-1

Related Entries With Identical Sequence