SMTL ID : 5jgi.2 (1 other biounit)

X-ray structure of neuropilin-1 b1 domain complexed with M45 compound

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.38 Å

Oligo State

monomer

Ligands

1 x AAG: N-ALPHA-L-ACETYL-ARGININE(Non-covalent)

AAG.1: 10 residues within 4Å: Chain A: Y.26, W.30, T.45, D.49, S.75, T.78, K.80, Y.82, G.143, I.144 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:Y.26 Hydrogen bonds: A:S.75, A:T.78, A:I.144 Water bridges: A:W.30, A:T.45, A:S.75 Salt bridges: A:D.49

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mota, F. et al., Architecture and hydration of the arginine-binding site of neuropilin-1. FEBS J. (2018)

Release Date

2017-05-10

Peptides

Neuropilin-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Neuropilin-1

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