- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.04 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x POP: PYROPHOSPHATE 2-(Non-covalent)
- 6 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 3 residues within 4Å:- Chain A: D.84
- Ligands: POP.1, MG.3
5 PLIP interactions:1 interactions with chain A, 4 Ligand-Water interactions- Metal complexes: A:D.84, H2O.1, H2O.3, H2O.5, H2O.5
MG.3: 5 residues within 4Å:- Chain A: D.84, E.88, K.220
- Ligands: POP.1, MG.2
4 PLIP interactions:1 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:D.84, H2O.1, H2O.3, H2O.5
MG.4: 4 residues within 4Å:- Chain A: N.213, S.217, E.221
- Ligands: POP.1
4 PLIP interactions:2 interactions with chain A, 1 Ligand-Water interactions, 1 Ligand-Ligand interactions- Metal complexes: A:S.217, A:E.221, H2O.1, POP.1
MG.9: 4 residues within 4Å:- Chain B: D.84, D.172
- Ligands: POP.8, MG.10
5 PLIP interactions:1 interactions with chain B, 4 Ligand-Water interactions- Metal complexes: B:D.84, H2O.9, H2O.10, H2O.11, H2O.12
MG.10: 5 residues within 4Å:- Chain B: D.84, E.88, K.220
- Ligands: POP.8, MG.9
4 PLIP interactions:1 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:D.84, H2O.9, H2O.10, H2O.11
MG.11: 4 residues within 4Å:- Chain B: N.213, S.217, E.221
- Ligands: POP.8
4 PLIP interactions:2 interactions with chain B, 1 Ligand-Ligand interactions, 1 Ligand-Water interactions- Metal complexes: B:S.217, B:E.221, POP.8, H2O.9
- 2 x JF1: (1S,5S,8S,9aR)-1,9a-dimethyl-8-(prop-1-en-2-yl)octahydro-2H-quinolizinium(Non-covalent)
JF1.5: 9 residues within 4Å:- Chain A: Y.61, L.80, F.81, F.147, V.173, L.178, L.209, N.213
- Ligands: POP.1
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:Y.61, A:L.80, A:F.81, A:F.147, A:V.173, A:L.178, A:N.213
JF1.12: 10 residues within 4Å:- Chain B: Y.61, L.80, F.81, F.147, D.172, V.173, L.178, L.209, N.213
- Ligands: POP.8
7 PLIP interactions:7 interactions with chain B- Hydrophobic interactions: B:L.80, B:F.81, B:F.81, B:F.147, B:V.173, B:L.178, B:N.213
- 2 x GOL: GLYCEROL(Non-functional Binders)
GOL.6: 3 residues within 4Å:- Chain A: R.107, E.142, R.149
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:R.107, A:R.149, A:R.149
- Water bridges: A:R.149
GOL.7: 3 residues within 4Å:- Chain A: H.37, R.114, Y.120
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:H.37, A:R.114
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chen, M. et al., Probing the Role of Active Site Water in the Sesquiterpene Cyclization Reaction Catalyzed by Aristolochene Synthase. Biochemistry (2016)
- Release Date
- 2016-05-25
- Peptides
- Aristolochene synthase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.04 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x POP: PYROPHOSPHATE 2-(Non-covalent)
- 6 x MG: MAGNESIUM ION(Non-covalent)
- 2 x JF1: (1S,5S,8S,9aR)-1,9a-dimethyl-8-(prop-1-en-2-yl)octahydro-2H-quinolizinium(Non-covalent)
- 2 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chen, M. et al., Probing the Role of Active Site Water in the Sesquiterpene Cyclization Reaction Catalyzed by Aristolochene Synthase. Biochemistry (2016)
- Release Date
- 2016-05-25
- Peptides
- Aristolochene synthase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
D