- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.04 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x POP: PYROPHOSPHATE 2-(Non-covalent)
- 12 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 3 residues within 4Å:- Chain A: D.84
- Ligands: POP.1, MG.3
5 PLIP interactions:1 interactions with chain A, 4 Ligand-Water interactions- Metal complexes: A:D.84, H2O.2, H2O.3, H2O.6, H2O.7
MG.3: 5 residues within 4Å:- Chain A: D.84, E.88, K.220
- Ligands: POP.1, MG.2
4 PLIP interactions:1 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:D.84, H2O.1, H2O.2, H2O.6
MG.4: 4 residues within 4Å:- Chain A: N.213, S.217, E.221
- Ligands: POP.1
3 PLIP interactions:2 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:S.217, A:E.221, H2O.4
MG.7: 4 residues within 4Å:- Chain B: D.84, D.172
- Ligands: POP.6, MG.8
5 PLIP interactions:1 interactions with chain B, 4 Ligand-Water interactions- Metal complexes: B:D.84, H2O.12, H2O.13, H2O.14, H2O.15
MG.8: 5 residues within 4Å:- Chain B: D.84, E.88, K.220
- Ligands: POP.6, MG.7
4 PLIP interactions:1 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:D.84, H2O.13, H2O.13, H2O.14
MG.9: 4 residues within 4Å:- Chain B: N.213, S.217, E.221
- Ligands: POP.6
4 PLIP interactions:2 interactions with chain B, 1 Ligand-Ligand interactions, 1 Ligand-Water interactions- Metal complexes: B:S.217, B:E.221, POP.6, H2O.13
MG.12: 3 residues within 4Å:- Chain C: D.84
- Ligands: POP.11, MG.13
5 PLIP interactions:1 interactions with chain C, 4 Ligand-Water interactions- Metal complexes: C:D.84, H2O.18, H2O.20, H2O.21, H2O.24
MG.13: 4 residues within 4Å:- Chain C: D.84, K.220
- Ligands: POP.11, MG.12
4 PLIP interactions:1 interactions with chain C, 3 Ligand-Water interactions- Metal complexes: C:D.84, H2O.17, H2O.18, H2O.21
MG.14: 4 residues within 4Å:- Chain C: N.213, S.217, E.221
- Ligands: POP.11
3 PLIP interactions:2 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:S.217, C:E.221, H2O.19
MG.18: 3 residues within 4Å:- Chain D: D.84
- Ligands: POP.17, MG.19
5 PLIP interactions:1 interactions with chain D, 4 Ligand-Water interactions- Metal complexes: D:D.84, H2O.32, H2O.33, H2O.35, H2O.35
MG.19: 5 residues within 4Å:- Chain D: D.84, E.88, K.220
- Ligands: POP.17, MG.18
4 PLIP interactions:1 interactions with chain D, 3 Ligand-Water interactions- Metal complexes: D:D.84, H2O.31, H2O.33, H2O.35
MG.20: 4 residues within 4Å:- Chain D: N.213, S.217, E.221
- Ligands: POP.17
4 PLIP interactions:2 interactions with chain D, 1 Ligand-Ligand interactions, 1 Ligand-Water interactions- Metal complexes: D:S.217, D:E.221, POP.17, H2O.31
- 4 x JF1: (1S,5S,8S,9aR)-1,9a-dimethyl-8-(prop-1-en-2-yl)octahydro-2H-quinolizinium(Non-covalent)
JF1.5: 11 residues within 4Å:- Chain A: Y.61, L.80, F.81, F.147, D.172, V.173, L.177, L.178, L.209, N.213
- Ligands: POP.1
10 PLIP interactions:10 interactions with chain A- Hydrophobic interactions: A:Y.61, A:L.80, A:F.81, A:F.81, A:F.147, A:F.147, A:V.173, A:L.177, A:L.178, A:N.213
JF1.10: 10 residues within 4Å:- Chain B: Y.61, L.80, F.81, F.147, D.172, V.173, L.178, L.209, N.213
- Ligands: POP.6
7 PLIP interactions:7 interactions with chain B- Hydrophobic interactions: B:L.80, B:F.81, B:F.81, B:F.147, B:V.173, B:L.178, B:N.213
JF1.15: 10 residues within 4Å:- Chain C: Y.61, L.80, F.81, F.147, D.172, V.173, L.178, L.209, N.213
- Ligands: POP.11
8 PLIP interactions:8 interactions with chain C- Hydrophobic interactions: C:Y.61, C:L.80, C:F.81, C:F.81, C:F.147, C:V.173, C:L.178, C:N.213
JF1.21: 9 residues within 4Å:- Chain D: Y.61, L.80, F.81, F.147, V.173, L.178, L.209, N.213
- Ligands: POP.17
7 PLIP interactions:7 interactions with chain D- Hydrophobic interactions: D:Y.61, D:L.80, D:F.81, D:F.147, D:V.173, D:L.178, D:N.213
- 3 x GOL: GLYCEROL(Non-functional Binders)
GOL.16: 7 residues within 4Å:- Chain C: R.107, E.142, R.149
- Chain D: R.197, E.200, L.275, L.280
5 PLIP interactions:3 interactions with chain C, 2 interactions with chain D- Hydrogen bonds: C:R.107, C:R.149, C:R.149, D:E.200
- Water bridges: D:E.200
GOL.22: 7 residues within 4Å:- Chain C: R.197, L.275, E.278, L.280
- Chain D: R.107, E.142, R.149
7 PLIP interactions:4 interactions with chain D, 3 interactions with chain C- Hydrogen bonds: D:R.107, D:R.149, D:R.149
- Water bridges: D:R.149, C:R.274, C:R.274, C:R.274
GOL.23: 3 residues within 4Å:- Chain D: H.37, R.114, Y.120
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:H.37, D:R.114
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chen, M. et al., Probing the Role of Active Site Water in the Sesquiterpene Cyclization Reaction Catalyzed by Aristolochene Synthase. Biochemistry (2016)
- Release Date
- 2016-05-25
- Peptides
- Aristolochene synthase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
DC
AD
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.04 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x POP: PYROPHOSPHATE 2-(Non-covalent)
- 12 x MG: MAGNESIUM ION(Non-covalent)
- 4 x JF1: (1S,5S,8S,9aR)-1,9a-dimethyl-8-(prop-1-en-2-yl)octahydro-2H-quinolizinium(Non-covalent)
- 3 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chen, M. et al., Probing the Role of Active Site Water in the Sesquiterpene Cyclization Reaction Catalyzed by Aristolochene Synthase. Biochemistry (2016)
- Release Date
- 2016-05-25
- Peptides
- Aristolochene synthase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
DC
AD
C