- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.65 Å
- Oligo State
- homo-pentamer
- Ligands
- 35 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 5 x ALA: ALANINE(Non-covalent)
ALA.10: 7 residues within 4Å:- Chain A: C.9, D.31, T.99, T.101, E.121, N.191
- Ligands: PRO.11
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:C.9, A:T.101, A:T.101, A:E.121, A:N.191
ALA.19: 7 residues within 4Å:- Chain B: C.9, D.31, T.99, T.101, E.121, N.191
- Ligands: PRO.20
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:C.9, B:T.101, B:E.121, B:N.191
ALA.27: 6 residues within 4Å:- Chain C: C.9, T.99, T.101, E.121, N.191
- Ligands: PRO.28
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:C.9, C:T.101, C:E.121, C:N.191
ALA.35: 6 residues within 4Å:- Chain D: C.9, T.99, T.101, E.121, N.191
- Ligands: PRO.36
5 PLIP interactions:5 interactions with chain D- Hydrogen bonds: D:C.9, D:T.101, D:T.101, D:E.121, D:N.191
ALA.45: 6 residues within 4Å:- Chain E: C.9, T.99, T.101, E.121, N.191
- Ligands: PRO.46
6 PLIP interactions:5 interactions with chain E, 1 Ligand-Ligand interactions- Hydrogen bonds: E:C.9, E:T.101, E:T.101, E:E.121, E:N.191, P.46
- 5 x PRO: PROLINE(Non-covalent)
PRO.11: 8 residues within 4Å:- Chain A: C.9, D.31, T.101, N.191, Y.243, R.312, R.318
- Ligands: ALA.10
5 PLIP interactions:5 interactions with chain A,- Hydrogen bonds: A:C.9, A:T.101, A:N.191
- Salt bridges: A:R.312, A:R.318
PRO.20: 8 residues within 4Å:- Chain B: C.9, D.31, T.101, N.191, Y.243, R.312, R.318
- Ligands: ALA.19
4 PLIP interactions:4 interactions with chain B,- Hydrogen bonds: B:T.101, B:N.191
- Salt bridges: B:R.312, B:R.318
PRO.28: 8 residues within 4Å:- Chain C: C.9, D.31, T.101, N.191, Y.243, R.312, R.318
- Ligands: ALA.27
5 PLIP interactions:5 interactions with chain C,- Hydrogen bonds: C:C.9, C:T.101, C:N.191
- Salt bridges: C:R.312, C:R.318
PRO.36: 8 residues within 4Å:- Chain D: C.9, D.31, T.101, N.191, Y.243, R.312, R.318
- Ligands: ALA.35
5 PLIP interactions:4 interactions with chain D, 1 Ligand-Ligand interactions- Hydrogen bonds: D:C.9, D:T.101, P.36
- Salt bridges: D:R.312, D:R.318
PRO.46: 7 residues within 4Å:- Chain E: C.9, T.101, N.191, Y.243, R.312, R.318
- Ligands: ALA.45
8 PLIP interactions:2 Ligand-Ligand interactions, 6 interactions with chain E- Hydrogen bonds: A.45, P.46, E:C.9, E:T.101
- Hydrophobic interactions: E:T.101
- Water bridges: E:Y.243
- Salt bridges: E:R.312, E:R.318
- 1 x ACT: ACETATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kono, R. et al., A C69-family cysteine dipeptidase from Lactobacillus farciminis; substrate recognition mechanism and autoproteolytic mechanism in enzyme maturation. To Be Published
- Release Date
- 2017-03-15
- Peptides
- Dipeptidase: ABCDE
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
E
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.65 Å
- Oligo State
- homo-pentamer
- Ligands
- 35 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 5 x ALA: ALANINE(Non-covalent)
- 5 x PRO: PROLINE(Non-covalent)
- 1 x ACT: ACETATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kono, R. et al., A C69-family cysteine dipeptidase from Lactobacillus farciminis; substrate recognition mechanism and autoproteolytic mechanism in enzyme maturation. To Be Published
- Release Date
- 2017-03-15
- Peptides
- Dipeptidase: ABCDE
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
E