SMTL ID : 5irc.3 (2 other biounits)

p190A GAP domain complex with RhoA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.72 Å

Oligo State

hetero-2-2-mer

Ligands

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 5 residues within 4Å: Chain A: Q.193, P.195, F.196 Chain C: Q.193, F.196 Ligand excluded by PLIP CL.2: 4 residues within 4Å: Chain A: P.12, L.13, P.91, D.92 Ligand excluded by PLIP CL.6: 4 residues within 4Å: Chain C: P.12, L.13, P.91, D.92 Ligand excluded by PLIP

2 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.3: 17 residues within 4Å: Chain A: R.46 Chain B: D.18, A.20, C.21, G.22, K.23, T.24, C.25, Y.39, K.123, D.125, L.126, S.165, A.166, K.167 Ligands: MG.4, MGF.5 20 PLIP interactions: 16 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:D.18, B:A.20, B:C.21, B:G.22, B:K.23, B:T.24, B:K.123, B:K.123, B:A.166, B:K.167 Water bridges: B:T.24, B:L.26, B:T.42, B:K.123, A:R.46, A:R.46 Salt bridges: B:K.23, B:D.125, A:R.46, A:R.46 GDP.7: 18 residues within 4Å: Chain C: R.46 Chain D: D.18, G.19, A.20, C.21, G.22, K.23, T.24, C.25, Y.39, K.123, D.125, L.126, S.165, A.166, K.167 Ligands: MG.8, MGF.9 22 PLIP interactions: 16 interactions with chain D, 6 interactions with chain C Hydrogen bonds: D:A.20, D:C.21, D:G.22, D:K.23, D:T.24, D:T.24, D:K.123, D:K.123, D:A.166, D:K.167, C:E.42 Water bridges: D:T.24, D:L.26, D:T.42, D:K.123, C:R.46, C:R.46, C:R.46 Salt bridges: D:K.23, D:D.125, C:R.46, C:R.46

2 x MG: MAGNESIUM ION(Non-covalent)

MG.4: 4 residues within 4Å: Chain B: T.24, T.42 Ligands: GDP.3, MGF.5 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:T.24, B:T.42, H2O.13, H2O.14 MG.8: 5 residues within 4Å: Chain D: T.24, T.42, D.64 Ligands: GDP.7, MGF.9 4 PLIP interactions: 2 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:T.24, D:T.42, H2O.32, H2O.34

2 x MGF: TRIFLUOROMAGNESATE(Non-covalent)

MGF.5: 12 residues within 4Å: Chain A: R.46 Chain B: D.18, G.19, A.20, K.23, P.41, T.42, A.66, G.67, Q.68 Ligands: GDP.3, MG.4 No protein-ligand interaction detected (PLIP) MGF.9: 12 residues within 4Å: Chain C: R.46 Chain D: D.18, G.19, A.20, K.23, P.41, T.42, A.66, G.67, Q.68 Ligands: GDP.7, MG.8 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Amin, E. et al., Deciphering the Molecular and Functional Basis of RHOGAP Family Proteins: A SYSTEMATIC APPROACH TOWARD SELECTIVE INACTIVATION OF RHO FAMILY PROTEINS. J.Biol.Chem. (2016)

Release Date

2016-08-17

Peptides

Rho GTPase-activating protein 35: AC
Transforming protein RhoA: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
B

B
F

D
D

Rho GTPase-activating protein 35

Transforming protein RhoA

Related Entries With Identical Sequence