SMTL ID : 5irm.1

Crystal structure of rabbit NOD2 in an ADP-bound state (Crystal form2)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.31 Å

Oligo State

homo-dimer

Ligands

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 17 residues within 4Å: Chain A: T.29, I.41, Y.42, T.43, A.91, G.92, S.93, G.94, K.95, S.96, T.97, F.237, Y.245, P.276, V.277, W.280, H.393 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:T.29, A:T.29, A:T.43, A:T.43, A:G.92, A:S.93, A:G.94, A:K.95, A:S.96, A:T.97, A:T.97 Salt bridges: A:K.95, A:H.393, A:H.393 pi-Stacking: A:F.237 ADP.2: 17 residues within 4Å: Chain B: I.41, Y.42, T.43, E.90, A.91, G.92, S.93, G.94, K.95, S.96, T.97, F.237, Y.245, P.276, V.277, W.280, H.393 14 PLIP interactions: 14 interactions with chain B Hydrogen bonds: B:T.43, B:T.43, B:G.92, B:S.93, B:G.94, B:K.95, B:S.96, B:S.96, B:T.97, B:T.97 Salt bridges: B:K.95, B:H.393, B:H.393 pi-Stacking: B:F.237

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Maekawa, S. et al., Crystal structure of NOD2 and its implications in human disease. Nat Commun (2016)

Release Date

2016-06-29

Peptides

Uncharacterized protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Uncharacterized protein

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