SMTL ID : 5irn.1

Crystal structure of rabbit NOD2 in an ADP-bound state (Crystal form1)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.34 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 17 residues within 4Å: Chain A: I.41, Y.42, T.43, E.90, A.91, G.92, S.93, G.94, K.95, S.96, T.97, F.237, Y.245, P.276, V.277, W.280, H.393 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:T.43, A:T.43, A:G.92, A:S.93, A:G.94, A:K.95, A:S.96, A:T.97, A:T.97 Water bridges: A:Y.42, A:K.95, A:K.95, A:L.98 Salt bridges: A:K.95, A:H.393, A:H.393 pi-Stacking: A:F.237

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Maekawa, S. et al., Crystal structure of NOD2 and its implications in human disease. Nat Commun (2016)

Release Date

2016-06-29

Peptides

Uncharacterized protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Uncharacterized protein

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