SMTL ID : 5itw.1

Crystal structure of Bacillus subtilis BacC Dihydroanticapsin 7-dehydrogenase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.19 Å

Oligo State

homo-tetramer

Ligands

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: M.1, I.2 Chain B: M.1, Q.30 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:Q.30, A:I.2 SO4.2: 8 residues within 4Å: Chain A: G.14, S.17, G.18, I.19, G.20, N.89, T.189, L.191 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.14, A:I.19, A:G.20, A:N.89 Water bridges: A:T.189, A:T.189 SO4.3: 4 residues within 4Å: Chain A: M.1, Q.30 Chain B: M.1, I.2 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:I.2, A:Q.30, A:Q.30 SO4.4: 7 residues within 4Å: Chain C: G.14, S.17, G.18, I.19, G.20, N.89, T.189 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:S.17, C:I.19, C:G.20, C:N.89 Water bridges: C:N.89 SO4.5: 4 residues within 4Å: Chain C: M.1, Q.30 Chain D: M.1, I.2 2 PLIP interactions: 1 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:I.2, C:Q.30 SO4.6: 4 residues within 4Å: Chain C: M.1, I.2 Chain D: M.1, Q.30 2 PLIP interactions: 1 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:Q.30, C:I.2 SO4.7: 7 residues within 4Å: Chain D: G.14, S.17, G.18, I.19, G.20, N.89, T.189 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:S.17, D:I.19, D:G.20, D:N.89 Water bridges: D:N.89 SO4.8: 7 residues within 4Å: Chain B: N.107, L.110, Q.111, T.115 Chain D: N.107, L.110, T.115 4 PLIP interactions: 3 interactions with chain D, 1 interactions with chain B Water bridges: D:N.107, D:T.115, D:T.115 Hydrogen bonds: B:T.115

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Perinbam, K. et al., Probing the influence of non-covalent contact networks identified by charge density analysis on the oxidoreductase BacC. Protein Eng. Des. Sel. (2017)

Release Date

2017-02-22

Peptides

Dihydroanticapsin 7-dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Dihydroanticapsin 7-dehydrogenase

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