SMTL ID : 5ixc.2 (1 other biounit)

Human GIVD cytosolic phospholipase A2 in complex with Methyl gamma-Linolenyl Fluorophosphonate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.65 Å

Oligo State

monomer

Ligands

1 x 7FA: methyl (R)-(6Z,9Z,12Z)-octadeca-6,9,12-trien-1-ylphosphonofluoridate(Covalent)

7FA.1: 17 residues within 4Å: Chain A: G.333, G.334, G.335, S.365, G.366, F.404, W.432, S.532, I.534, F.535, G.586, L.589, Y.654, F.655, L.772, S.773, M.775 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:F.404, A:W.432, A:I.534, A:F.535, A:L.589, A:L.772 Hydrogen bonds: A:G.334, A:G.335, A:G.366 Water bridges: A:G.333

3 x BA: BARIUM ION(Non-covalent)

BA.2: 2 residues within 4Å: Chain A: D.169, H.171 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.169 BA.3: 4 residues within 4Å: Chain A: S.45, E.46, D.48, D.70 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:S.45, A:E.46, H2O.2 BA.4: 3 residues within 4Å: Chain A: D.100, T.103, D.105 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.100, A:T.103

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, H. et al., Structure of Human GIVD Cytosolic Phospholipase A2 Reveals Insights into Substrate Recognition. J.Mol.Biol. (2016)

Release Date

2016-06-08

Peptides

Cytosolic phospholipase A2 delta: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Cytosolic phospholipase A2 delta

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