SMTL ID : 5izr.1 (3 other biounits)

Human GIVD cytosolic phospholipase A2 in complex with Methyl gamma-Linolenyl Fluorophosphonate inhibitor and Terbium Chloride

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.25 Å

Oligo State

monomer

Ligands

1 x 7FA: methyl (R)-(6Z,9Z,12Z)-octadeca-6,9,12-trien-1-ylphosphonofluoridate(Covalent)

7FA.1: 14 residues within 4Å: Chain A: G.334, G.335, S.365, G.366, F.404, S.532, I.534, F.535, G.586, L.589, Y.654, L.772, S.773, M.775 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.404, A:I.534, A:F.535, A:F.535, A:L.589, A:L.772 Hydrogen bonds: A:G.334, A:G.335, A:G.366

4 x TB: TERBIUM(III) ION(Non-covalent)

TB.2: 2 residues within 4Å: Chain A: D.48, D.70 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.48, A:D.70, H2O.1, H2O.1, H2O.1 TB.3: 2 residues within 4Å: Chain A: D.100, D.106 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.106, A:D.106 TB.4: 2 residues within 4Å: Chain A: E.99, D.105 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.105, A:D.105 TB.5: 1 residues within 4Å: Chain A: D.651 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.651

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, H. et al., Structure of Human GIVD Cytosolic Phospholipase A2 Reveals Insights into Substrate Recognition. J.Mol.Biol. (2016)

Release Date

2016-06-08

Peptides

Cytosolic phospholipase A2 delta: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cytosolic phospholipase A2 delta

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