SMTL ID : 5izd.1 (1 other biounit)

Wild-type glyceraldehyde dehydrogenase from Thermoplasma acidophilum in complex with NADP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-tetramer

Ligands

4 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 19 residues within 4Å: Chain A: L.145, T.146, W.148, K.172, P.173, S.174, S.175, G.203, R.204, G.205, G.209, D.210, V.213, M.223, T.224, G.225, S.226, T.229, R.232 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:T.146, A:T.146, A:W.148, A:S.174, A:S.175, A:G.205, A:D.210, A:D.210, A:D.210, A:S.226, A:S.226, A:T.229, A:T.229 Water bridges: A:S.206, A:S.206, A:G.209 Salt bridges: A:K.172 NAP.2: 20 residues within 4Å: Chain B: L.145, T.146, P.147, W.148, K.172, P.173, S.174, S.175, G.203, G.205, G.209, D.210, V.213, M.223, T.224, G.225, S.226, T.229, R.232, I.233 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:T.146, B:T.146, B:W.148, B:S.175, B:S.175, B:G.205, B:D.210, B:S.226, B:T.229 Salt bridges: B:K.172 NAP.3: 19 residues within 4Å: Chain C: L.145, T.146, W.148, K.172, P.173, S.174, S.175, G.203, R.204, G.205, G.209, D.210, V.213, M.223, T.224, G.225, S.226, T.229, R.232 16 PLIP interactions: 16 interactions with chain C Hydrogen bonds: C:T.146, C:W.148, C:S.174, C:S.175, C:G.205, C:D.210, C:S.226, C:S.226, C:T.229, C:T.229 Water bridges: C:D.176, C:S.206, C:S.206, C:D.210, C:D.210 Salt bridges: C:K.172 NAP.4: 19 residues within 4Å: Chain D: L.145, T.146, W.148, K.172, P.173, S.174, S.175, G.203, G.205, G.209, D.210, V.213, M.223, T.224, G.225, S.226, T.229, R.232, I.233 10 PLIP interactions: 10 interactions with chain D Hydrogen bonds: D:T.146, D:W.148, D:S.175, D:S.175, D:G.205, D:D.210, D:D.210, D:S.226, D:T.229 Salt bridges: D:K.172

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Iermak, I. et al., Structure of wild-type glyceraldehyde dehydrogenase from Thermoplasma acidophilum in complex with NADP. To Be Published

Release Date

2017-04-05

Peptides

D-glyceraldehyde dehydrogenase (NADP(+)): ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

D-glyceraldehyde dehydrogenase (NADP(+))

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