SMTL ID : 5jah.1

Exploitation of a Novel Binding Pocket in Human Lipoprotein-Associated Phospholipase A2 (Lp-PLA₂) Discovered Through X-Ray Fragment Screening

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.06 Å

Oligo State

monomer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain A: Y.276, F.277, V.305, H.306 Ligand excluded by PLIP

1 x 6HQ: 1,5,5-trimethylimidazolidine-2,4-dione(Non-covalent)

6HQ.2: 9 residues within 4Å: Chain A: F.65, G.107, L.108, S.228, F.229, W.253, F.277, H.306, Q.307 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.108, A:F.277 Hydrogen bonds: A:L.108, A:S.228, A:F.229, A:Q.307 pi-Cation interactions: A:H.306

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Woolford, A.J. et al., Exploitation of a Novel Binding Pocket in Human Lipoprotein-Associated Phospholipase A2 (Lp-PLA2) Discovered through X-ray Fragment Screening. J.Med.Chem. (2016)

Release Date

2016-05-25

Peptides

Platelet-activating factor acetylhydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Platelet-activating factor acetylhydrolase

Related Entries With Identical Sequence