SMTL ID : 5jat.1

Exploitation of a Novel Binding Pocket in Human Lipoprotein-Associated Phospholipase A2 (Lp-PLA₂) Discovered Through X-Ray Fragment Screening

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.04 Å

Oligo State

monomer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain A: Y.276, F.277, V.305, H.306 Ligand excluded by PLIP

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 5 residues within 4Å: Chain A: L.108, S.228, W.253, F.277, H.306 1 PLIP interactions: 1 interactions with chain A pi-Cation interactions: A:W.253

1 x 6HR: 3-{2-[(2',6-dimethyl[1,1'-biphenyl]-3-yl)amino]-1,3-thiazol-4-yl}propan-1-ol(Non-covalent)

6HR.3: 21 residues within 4Å: Chain A: W.52, I.53, F.59, L.62, F.65, L.66, L.76, F.80, G.107, L.108, G.109, A.110, Y.115, H.227, Q.307, A.310, F.312, A.315, T.316, L.324, L.326 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:F.65, A:L.66, A:L.66, A:L.76, A:L.76, A:F.80, A:F.312, A:F.312, A:L.326 Hydrogen bonds: A:Q.307 Water bridges: A:L.108 pi-Stacking: A:F.312

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Woolford, A.J. et al., Exploitation of a Novel Binding Pocket in Human Lipoprotein-Associated Phospholipase A2 (Lp-PLA2) Discovered through X-ray Fragment Screening. J.Med.Chem. (2016)

Release Date

2016-05-25

Peptides

Platelet-activating factor acetylhydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Platelet-activating factor acetylhydrolase

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