SMTL ID : 5jfl.2 (1 other biounit)

Crystal structure of Rhodopseudomonas palustris propionaldehyde dehydrogenase with bound NAD+

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-tetramer

Ligands

4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 26 residues within 4Å: Chain A: I.194, T.195, P.196, T.197, T.198, N.199, S.221, P.222, H.223, P.224, I.259, N.263, T.277, G.278, G.279, I.282, A.296, G.297, A.298, C.330, E.419, M.421, H.449, F.493, T.494, I.495 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:P.196, A:T.277 Hydrogen bonds: A:T.195, A:T.197, A:G.279, A:G.297, A:E.419, A:I.495 Water bridges: A:I.282 Salt bridges: A:H.223, A:H.223 NAD.2: 26 residues within 4Å: Chain B: I.194, T.195, P.196, T.197, T.198, N.199, H.223, P.224, I.259, T.262, N.263, T.277, G.278, G.279, I.282, A.296, G.297, A.298, G.299, C.330, E.419, M.421, H.449, F.493, T.494, I.495 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:T.277 Hydrogen bonds: B:T.195, B:T.197, B:G.279, B:G.297, B:G.299, B:E.419, B:I.495 Salt bridges: B:H.223 NAD.3: 28 residues within 4Å: Chain C: I.194, T.195, P.196, T.197, T.198, S.221, P.222, H.223, P.224, I.259, T.262, N.263, T.277, G.278, G.279, A.281, I.282, A.296, G.297, A.298, G.299, C.330, E.419, M.421, H.449, F.493, T.494, I.495 13 PLIP interactions: 13 interactions with chain C Hydrophobic interactions: C:P.196, C:T.277 Hydrogen bonds: C:T.195, C:T.197, C:G.279, C:G.299, C:E.419, C:I.495, C:I.495 Water bridges: C:H.223, C:N.263, C:I.282, C:G.497 NAD.4: 24 residues within 4Å: Chain D: I.194, T.195, P.196, T.197, T.198, N.199, P.222, H.223, I.259, N.263, T.277, G.278, G.279, I.282, A.296, G.297, A.298, C.330, E.419, M.421, H.449, F.493, T.494, I.495 13 PLIP interactions: 13 interactions with chain D Hydrophobic interactions: D:T.277 Hydrogen bonds: D:T.195, D:T.197, D:T.197, D:T.198, D:H.223, D:G.279, D:E.419, D:I.495, D:I.495 Water bridges: D:G.299 Salt bridges: D:H.223, D:H.223

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zarzycki, J. et al., In Vitro Characterization and Concerted Function of Three Core Enzymes of a Glycyl Radical Enzyme - Associated Bacterial Microcompartment. Sci Rep (2017)

Release Date

2017-03-01

Peptides

Aldehyde dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

C
G

D
H

Aldehyde dehydrogenase

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